Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04292 and EFB2_04293 are separated by 118 nucleotidesEFB2_04293 and EFB2_04294 are separated by 49 nucleotidesEFB2_04294 and EFB2_04295 are separated by 393 nucleotidesEFB2_04295 and EFB2_04296 are separated by 157 nucleotides EFB2_04292: EFB2_04292 - HTH-type transcriptional regulator TreR, at 4,511,357 to 4,512,304 _04292 EFB2_04293: EFB2_04293 - PTS system trehalose-specific EIIBC component, at 4,512,423 to 4,513,844 _04293 EFB2_04294: EFB2_04294 - Trehalose-6-phosphate hydrolase, at 4,513,894 to 4,515,549 _04294 EFB2_04295: EFB2_04295 - Anaerobic ribonucleoside-triphosphate reductase, at 4,515,943 to 4,518,081 _04295 EFB2_04296: EFB2_04296 - Anaerobic ribonucleoside-triphosphate reductase-activating protein, at 4,518,239 to 4,518,703 _04296
Group Condition EFB2_04292 EFB2_04293 EFB2_04294 EFB2_04295 EFB2_04296
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.1 -1.5 -2.8 -2.7
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.0 -1.5 -2.8 -2.7
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.1 -1.2 -2.8 -2.7
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.2 +0.1 -1.3 -2.7 -2.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.0 -1.3 -2.7 -2.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.0 -0.9 -2.8 -2.7
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.1 -1.2 -2.8 -2.7
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 +0.2 -1.3 -2.8 -2.7
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.0 -1.0 -2.8 -2.7
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.0 -1.0 -2.7 -2.7
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.1 -1.3 -2.7 -2.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 -0.9 -2.7 -2.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.1 -1.2 -2.6 -2.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 +0.1 -1.3 -2.6 -2.5
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.0 -1.0 -2.7 -2.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.0 -1.1 -2.6 -2.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.0 -1.0 -2.7 -2.6
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.0 -0.7 -2.8 -2.7
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.2 +0.0 -0.9 -2.7 -2.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 -0.1 -0.9 -2.6 -2.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 -0.9 -2.7 -2.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.0 -0.8 -2.6 -2.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.0 -0.1 -0.9 -2.6 -2.6
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 +0.1 -1.0 -2.7 -2.6
no phage control BHIS_CaCl2 no phage control +0.1 -0.0 -0.9 -2.7 -2.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.2 -0.8 -2.7 -2.6
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 +0.1 -1.1 -2.6 -2.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 +0.2 -0.9 -2.6 -2.6
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.2 -0.0 -1.1 -2.6 -2.5
no phage control BHIS_CaCl2 no phage control +0.2 +0.0 -0.9 -2.7 -2.6
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