Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04289 and EFB2_04290 are separated by 72 nucleotidesEFB2_04290 and EFB2_04291 are separated by 205 nucleotidesEFB2_04291 and EFB2_04292 are separated by 378 nucleotidesEFB2_04292 and EFB2_04293 are separated by 118 nucleotides EFB2_04289: EFB2_04289 - Aspartate carbamoyltransferase regulatory chain, at 4,507,156 to 4,507,617 _04289 EFB2_04290: EFB2_04290 - 2-iminobutanoate/2-iminopropanoate deaminase, at 4,507,690 to 4,508,076 _04290 EFB2_04291: EFB2_04291 - Magnesium-transporting ATPase, P-type 1, at 4,508,282 to 4,510,978 _04291 EFB2_04292: EFB2_04292 - HTH-type transcriptional regulator TreR, at 4,511,357 to 4,512,304 _04292 EFB2_04293: EFB2_04293 - PTS system trehalose-specific EIIBC component, at 4,512,423 to 4,513,844 _04293
Group Condition EFB2_04289 EFB2_04290 EFB2_04291 EFB2_04292 EFB2_04293
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 -1.2 -0.0 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -1.1 -0.0 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.8 -0.0 -0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.8 -0.1 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.8 -0.1 -0.3 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.7 -0.0 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.8 +0.0 -0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.7 -0.0 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.8 +0.0 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 -0.8 +0.0 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.8 +0.0 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 -0.7 -0.1 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.8 -0.0 -0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.8 -0.1 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.8 +0.0 -0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.6 -0.1 -0.2 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.0 -0.8 -0.1 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.7 -0.1 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.6 +0.1 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 -0.7 -0.0 -0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 -0.8 -0.1 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 -0.7 +0.1 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.6 -0.0 -0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.7 -0.0 -0.0 +0.1
no phage control BHIS_CaCl2 no phage control +0.1 -0.7 -0.0 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.6 -0.1 -0.0 +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.1 -0.7 -0.0 +0.1 +0.0
no phage control BHIS no phage control -0.1 -0.5 -0.1 +0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.7 +0.0 -0.1 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.6 +0.0 +0.1 +0.2
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