Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04248 and EFB2_04249 are separated by 207 nucleotidesEFB2_04249 and EFB2_04250 are separated by 149 nucleotidesEFB2_04250 and EFB2_04251 are separated by 49 nucleotidesEFB2_04251 and EFB2_04252 are separated by 85 nucleotides EFB2_04248: EFB2_04248 - Major pilu subunit operon regulatory protein PapB, at 4,460,896 to 4,461,210 _04248 EFB2_04249: EFB2_04249 - Pap fimbrial major pilin protein, at 4,461,418 to 4,461,981 _04249 EFB2_04250: EFB2_04250 - PAP fimbrial minor pilin protein, at 4,462,131 to 4,462,631 _04250 EFB2_04251: EFB2_04251 - Outer membrane usher protein PapC, at 4,462,681 to 4,465,200 _04251 EFB2_04252: EFB2_04252 - Chaperone protein PapD, at 4,465,286 to 4,466,005 _04252
Group Condition EFB2_04248 EFB2_04249 EFB2_04250 EFB2_04251 EFB2_04252
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.3 N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with 14 member community N.D. -0.3 N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.2 N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.2 N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. -0.2 N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.2 N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.1 N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.1 N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.1 N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.1 N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.1 N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.1 N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. +0.1 N.D. N.D. N.D.
no phage control BHIS_CaCl2 no phage control N.D. +0.1 N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.1 N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.1 N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.1 N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.1 N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.1 N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.1 N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.1 N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with 14 member community N.D. +0.1 N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. +0.1 N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. +0.2 N.D. N.D. N.D.
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. +0.2 N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.2 N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.2 N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. +0.2 N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.2 N.D. N.D. N.D.
no phage control BHIS_CaCl2 no phage control N.D. +0.3 N.D. N.D. N.D.
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