Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04231 and EFB2_04232 are separated by 30 nucleotidesEFB2_04232 and EFB2_04233 are separated by 855 nucleotidesEFB2_04233 and EFB2_04234 are separated by 169 nucleotidesEFB2_04234 and EFB2_04235 are separated by 50 nucleotides EFB2_04231: EFB2_04231 - hypothetical protein, at 4,445,063 to 4,445,413 _04231 EFB2_04232: EFB2_04232 - IS66 family transposase IS682, at 4,445,444 to 4,447,057 _04232 EFB2_04233: EFB2_04233 - HTH-type transcriptional regulator BetI, at 4,447,913 to 4,448,554 _04233 EFB2_04234: EFB2_04234 - hypothetical protein, at 4,448,724 to 4,449,272 _04234 EFB2_04235: EFB2_04235 - 4-hydroxymandelate oxidase, at 4,449,323 to 4,450,540 _04235
Group Condition EFB2_04231 EFB2_04232 EFB2_04233 EFB2_04234 EFB2_04235
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.1 -0.4 N.D. +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.0 -0.4 N.D. -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.2 -0.0 -0.5 N.D. +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 -0.0 -0.5 N.D. -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 -0.1 -0.4 N.D. -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 -0.5 N.D. +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.0 -0.5 N.D. +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.0 -0.3 N.D. +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.0 -0.2 N.D. -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.1 -0.2 N.D. -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.0 -0.3 N.D. -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.0 -0.3 N.D. +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 -0.2 N.D. -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.0 -0.3 N.D. -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.3 -0.0 -0.0 N.D. -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.0 -0.3 N.D. -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 +0.0 -0.3 N.D. -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 -0.1 +0.1 N.D. -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.1 -0.4 N.D. +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.0 -0.2 N.D. -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 -0.2 N.D. +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.3 -0.0 -0.0 N.D. +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.1 -0.0 N.D. +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.2 -0.1 -0.0 N.D. +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.1 +0.2 N.D. -0.0
no phage control BHIS_CaCl2 no phage control -0.2 -0.0 +0.0 N.D. +0.2
no phage control BHIS no phage control -0.1 +0.0 +0.3 N.D. -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.0 +0.3 N.D. -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.0 +0.3 N.D. +0.0
no phage control BHIS_CaCl2 no phage control +0.3 +0.1 +0.3 N.D. +0.7
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