Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04177 and EFB2_04178 are separated by 290 nucleotidesEFB2_04178 and EFB2_04179 are separated by 22 nucleotidesEFB2_04179 and EFB2_04180 overlap by 1 nucleotidesEFB2_04180 and EFB2_04181 are separated by 519 nucleotides EFB2_04177: EFB2_04177 - IS3 family transposase IS629, at 4,379,707 to 4,380,594 _04177 EFB2_04178: EFB2_04178 - hypothetical protein, at 4,380,885 to 4,381,463 _04178 EFB2_04179: EFB2_04179 - hypothetical protein, at 4,381,486 to 4,382,304 _04179 EFB2_04180: EFB2_04180 - hypothetical protein, at 4,382,304 to 4,382,822 _04180 EFB2_04181: EFB2_04181 - Propanediol utilization protein PduA, at 4,383,342 to 4,383,620 _04181
Group Condition EFB2_04177 EFB2_04178 EFB2_04179 EFB2_04180 EFB2_04181
mixed community no phage control BHIS no phage control with 14 member community -0.0 -0.1 -0.2 +0.1 -2.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.2 -0.0 -0.1 -0.8
no phage control BHIS_CaCl2 no phage control +0.2 -0.2 +0.0 -0.2 -0.9
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.0 -0.1 -0.0 -0.8
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.0 +0.1 -0.2 -0.7
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.0 -0.2 -0.1 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 +0.3 -0.2 -0.7
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.0 -0.1 -0.0 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.1 -0.2 -0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.0 -0.2 -0.1 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 +0.1 -0.0 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.0 -0.2 +0.0 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 +0.0 -0.0 -0.1 -0.5
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.2 -0.1 -0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.0 +0.0 -0.2 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.1 -0.2 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 -0.0 -0.1 -0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 +0.0 +0.0 -0.1 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 -0.1 +0.0 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.1 +0.1 -0.1 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.1 +0.0 -0.0 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.0 -0.2 +0.0 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.0 +0.0 -0.0 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.0 -0.0 -0.1 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.0 +0.1 -0.1 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.0 +0.1 -0.0 -0.5
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.0 -0.3 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.0 -0.1 -0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.0 -0.3 -0.1 +0.7
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.0 -0.0 +0.0 +0.4
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