Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04112 and EFB2_04113 are separated by 12 nucleotidesEFB2_04113 and EFB2_04114 are separated by 249 nucleotidesEFB2_04114 and EFB2_04115 overlap by 4 nucleotidesEFB2_04115 and EFB2_04116 are separated by 12 nucleotides EFB2_04112: EFB2_04112 - hypothetical protein, at 4,320,434 to 4,321,612 _04112 EFB2_04113: EFB2_04113 - putative RNA 2'-phosphotransferase, at 4,321,625 to 4,322,179 _04113 EFB2_04114: EFB2_04114 - hypothetical protein, at 4,322,429 to 4,323,112 _04114 EFB2_04115: EFB2_04115 - Inner membrane protein YjiG, at 4,323,109 to 4,323,570 _04115 EFB2_04116: EFB2_04116 - Isoaspartyl dipeptidase, at 4,323,583 to 4,324,755 _04116
Group Condition EFB2_04112 EFB2_04113 EFB2_04114 EFB2_04115 EFB2_04116
no phage control BHIS_CaCl2 no phage control +0.2 +0.5 -0.4 -0.1 -0.7
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.1 -0.0 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.1 +0.2 -0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 -0.1 +0.1 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.1 -0.2 +0.0 -0.1
no phage control BHIS no phage control -0.1 +0.1 -0.1 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.1 -0.2 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.2 -0.2 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 -0.1 +0.2 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 -0.1 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 +0.1 +0.1 -0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community +0.1 -0.2 +0.0 +0.2 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.0 +0.2 +0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.0 +0.3 -0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.0 +0.1 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.0 -0.0 -0.0 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.1 +0.1 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.1 +0.3 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.1 +0.1 +0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.2 +0.3 +0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.1 +0.1 +0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.1 +0.1 +0.2 -0.2
no phage control BHIS no phage control +0.0 -0.1 +0.2 +0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.1 +0.1 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.0 -0.1 +0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.0 +0.2 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.2 +0.1 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.1 +0.1 +0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community +0.2 +0.1 +0.1 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.2 +0.1 +0.1 -0.0
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