Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04090 and EFB2_04091 are separated by 138 nucleotidesEFB2_04091 and EFB2_04092 are separated by 214 nucleotidesEFB2_04092 and EFB2_04093 are separated by 48 nucleotidesEFB2_04093 and EFB2_04094 are separated by 376 nucleotides EFB2_04090: EFB2_04090 - L-galactonate-5-dehydrogenase, at 4,296,198 to 4,297,220 _04090 EFB2_04091: EFB2_04091 - putative HTH-type transcriptional regulator LgoR, at 4,297,359 to 4,298,273 _04091 EFB2_04092: EFB2_04092 - putative L-galactonate transporter, at 4,298,488 to 4,299,849 _04092 EFB2_04093: EFB2_04093 - Methyl-accepting chemotaxis protein I, at 4,299,898 to 4,301,562 _04093 EFB2_04094: EFB2_04094 - Pyruvate/proton symporter BtsT, at 4,301,939 to 4,304,089 _04094
Group Condition EFB2_04090 EFB2_04091 EFB2_04092 EFB2_04093 EFB2_04094
no phage control BHIS_CaCl2 no phage control -0.6 -0.1 -0.1 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.1 -0.1 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.4 +0.2 -0.0 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.0 -0.1 +0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.1 -0.1 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.0 -0.2 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.0 -0.1 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.1 -0.1 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.1 -0.1 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 -0.1 -0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.0 +0.0 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 -0.1 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 +0.1 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 -0.0 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.2 -0.1 -0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.1 -0.1 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.1 -0.2 +0.0 -0.0
mixed community no phage control BHIS no phage control with 14 member community +0.2 -0.0 -0.1 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.0 -0.0 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 +0.2 -0.0 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 -0.0 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.1 -0.1 -0.0 -0.0
no phage control BHIS no phage control +0.3 +0.0 -0.1 +0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 -0.1 +0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.1 +0.0 +0.1 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.3 +0.1 +0.0 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.1 -0.0 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 +0.0 +0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 +0.0 -0.0 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 +0.1 -0.0 +0.1 -0.0
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