Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04087 and EFB2_04088 are separated by 48 nucleotidesEFB2_04088 and EFB2_04089 are separated by 253 nucleotidesEFB2_04089 and EFB2_04090 are separated by 137 nucleotidesEFB2_04090 and EFB2_04091 are separated by 138 nucleotides EFB2_04087: EFB2_04087 - DNA replication protein DnaC, at 4,292,235 to 4,292,972 _04087 EFB2_04088: EFB2_04088 - hypothetical protein, at 4,293,021 to 4,293,515 _04088 EFB2_04089: EFB2_04089 - Phosphoglycerol transferase I, at 4,293,769 to 4,296,060 _04089 EFB2_04090: EFB2_04090 - L-galactonate-5-dehydrogenase, at 4,296,198 to 4,297,220 _04090 EFB2_04091: EFB2_04091 - putative HTH-type transcriptional regulator LgoR, at 4,297,359 to 4,298,273 _04091
Group Condition EFB2_04087 EFB2_04088 EFB2_04089 EFB2_04090 EFB2_04091
no phage control BHIS_CaCl2 no phage control N.D. +0.2 -0.5 -0.6 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. -0.3 -0.1 -0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.1 +0.0 -0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.3 +0.0 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.2 -0.1 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.1 +0.1 -0.4 +0.2
mixed community no phage control BHIS no phage control with 14 member community N.D. -0.1 +0.0 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.1 -0.0 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.1 -0.1 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.2 -0.1 +0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.2 +0.0 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.0 +0.1 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.2 -0.0 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. +0.0 -0.1 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. -0.2 +0.1 +0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.2 +0.1 +0.1 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. -0.1 +0.0 +0.1 +0.1
no phage control BHIS no phage control N.D. +0.2 -0.1 +0.0 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. +0.2 -0.1 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.1 +0.1 +0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.0 +0.1 -0.1 +0.1
no phage control BHIS no phage control N.D. +0.0 -0.1 +0.3 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.1 +0.0 +0.3 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.1 -0.1 +0.1 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. -0.1 -0.0 +0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.0 -0.0 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.1 +0.1 +0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. +0.1 +0.0 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.1 -0.1 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.1 +0.0 +0.2 +0.1
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