Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04081 and EFB2_04082 are separated by 37 nucleotidesEFB2_04082 and EFB2_04083 overlap by 43 nucleotidesEFB2_04083 and EFB2_04084 are separated by 619 nucleotidesEFB2_04084 and EFB2_04085 overlap by 10 nucleotides EFB2_04081: EFB2_04081 - Ferric iron reductase protein FhuF, at 4,287,545 to 4,288,333 _04081 EFB2_04082: EFB2_04082 - Transcriptional activator protein BglJ, at 4,288,371 to 4,289,048 _04082 EFB2_04083: EFB2_04083 - Putative transcription factor YjjQ, at 4,289,006 to 4,289,731 _04083 EFB2_04084: EFB2_04084 - Inner membrane protein YjjP, at 4,290,351 to 4,291,121 _04084 EFB2_04085: EFB2_04085 - hypothetical protein, at 4,291,112 to 4,291,585 _04085
Group Condition EFB2_04081 EFB2_04082 EFB2_04083 EFB2_04084 EFB2_04085
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 -0.1 -0.1 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 -0.1 -0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.1 -0.2 -0.0 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.1 -0.2 -0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 -0.0 -0.1 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 -0.2 +0.0 -0.3
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.0 +0.1 -0.1 -0.0 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.0 -0.1 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.2 -0.2 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.0 -0.0 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 -0.0 +0.1 -0.1 -0.2
mixed community no phage control BHIS no phage control with 14 member community -0.0 +0.0 +0.1 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.0 -0.1 -0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 -0.0 -0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.0 +0.1 -0.0 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.0 +0.0 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 +0.1 -0.2 -0.2 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.1 +0.0 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.2 -0.1 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.2 -0.2 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.2 -0.1 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 +0.1 +0.1 -0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.0 +0.1 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.1 +0.2 -0.0 -0.1
no phage control BHIS_CaCl2 no phage control -0.1 +0.2 +0.5 -0.0 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 +0.0 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.1 +0.1 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.0 +0.0 -0.0 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.2 +0.1 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.1 +0.1 +0.1 +0.1
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