Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04079 and EFB2_04080 are separated by 38 nucleotidesEFB2_04080 and EFB2_04081 are separated by 140 nucleotidesEFB2_04081 and EFB2_04082 are separated by 37 nucleotidesEFB2_04082 and EFB2_04083 overlap by 43 nucleotides EFB2_04079: EFB2_04079 - tRNA-Leu, at 4,287,043 to 4,287,129 _04079 EFB2_04080: EFB2_04080 - hypothetical protein, at 4,287,168 to 4,287,404 _04080 EFB2_04081: EFB2_04081 - Ferric iron reductase protein FhuF, at 4,287,545 to 4,288,333 _04081 EFB2_04082: EFB2_04082 - Transcriptional activator protein BglJ, at 4,288,371 to 4,289,048 _04082 EFB2_04083: EFB2_04083 - Putative transcription factor YjjQ, at 4,289,006 to 4,289,731 _04083
Group Condition EFB2_04079 EFB2_04080 EFB2_04081 EFB2_04082 EFB2_04083
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.1 -0.1 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.3 +0.1 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.2 -0.1 +0.0 +0.1
no phage control BHIS_CaCl2 no phage control N.D. -0.2 +0.1 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.2 +0.1 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.1 -0.1 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. -0.1 -0.1 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.1 -0.1 +0.1 -0.2
no phage control BHIS_CaCl2 no phage control N.D. -0.3 +0.1 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. -0.1 +0.0 +0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.1 -0.0 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. -0.1 +0.1 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.2 +0.0 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.2 +0.0 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.1 +0.0 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.1 -0.0 +0.2 -0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. +0.2 -0.0 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.1 +0.1 +0.1 -0.1
no phage control BHIS no phage control N.D. +0.2 +0.0 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.0 +0.0 +0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. +0.2 +0.1 +0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.1 +0.1 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.1 +0.0 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. -0.0 +0.1 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. +0.3 +0.0 +0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community N.D. +0.3 -0.0 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. +0.1 +0.0 +0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.1 +0.1 +0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.3 +0.0 +0.1 +0.1
no phage control BHIS_CaCl2 no phage control N.D. +0.4 -0.1 +0.2 +0.5
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