Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04066 and EFB2_04067 are separated by 130 nucleotidesEFB2_04067 and EFB2_04068 are separated by 216 nucleotidesEFB2_04068 and EFB2_04069 overlap by 4 nucleotidesEFB2_04069 and EFB2_04070 are separated by 121 nucleotides EFB2_04066: EFB2_04066 - putative protein YjjI, at 4,276,414 to 4,277,964 _04066 EFB2_04067: EFB2_04067 - Putative glycyl-radical enzyme activating enzyme YjjW, at 4,278,095 to 4,278,799 _04067 EFB2_04068: EFB2_04068 - putative metal-dependent hydrolase YjjV, at 4,279,016 to 4,279,795 _04068 EFB2_04069: EFB2_04069 - hypothetical protein, at 4,279,792 to 4,280,865 _04069 EFB2_04070: EFB2_04070 - hypothetical protein, at 4,280,987 to 4,281,148 _04070
Group Condition EFB2_04066 EFB2_04067 EFB2_04068 EFB2_04069 EFB2_04070
no phage control BHIS_CaCl2 no phage control -0.0 -0.5 +0.1 +0.1 -0.5
mixed community no phage control BHIS no phage control with 14 member community +0.2 +0.1 +0.0 -0.0 -1.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 -0.4 -0.1 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 -0.3 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.2 -0.2 +0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.3 -0.0 +0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.2 -0.2 +0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.2 -0.2 +0.0 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.2 -0.0 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 +0.1 -0.3 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.1 -0.2 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 -0.2 -0.4 +0.1 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.3 -0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 -0.2 -0.1 -0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 -0.2 -0.1 +0.0 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.2 -0.1 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -0.5 +0.0 +0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.3 -0.2 +0.1 +0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 +0.1 +0.0 +0.2
mixed community no phage control BHIS no phage control with 14 member community -0.0 +0.1 +0.0 +0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.2 -0.2 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.2 -0.1 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.2 -0.1 +0.1 +0.1
no phage control BHIS no phage control -0.0 +0.1 -0.1 -0.0 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.0 -0.2 +0.2 +0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.2 -0.1 +0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.4 -0.1 -0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.2 -0.0 +0.1 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 +0.2 +0.1 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.2 +0.2 +0.2 +0.2
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