Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04051 and EFB2_04052 are separated by 119 nucleotidesEFB2_04052 and EFB2_04053 are separated by 206 nucleotidesEFB2_04053 and EFB2_04054 are separated by 55 nucleotidesEFB2_04054 and EFB2_04055 are separated by 1 nucleotides EFB2_04051: EFB2_04051 - Trp operon repressor, at 4,259,988 to 4,260,284 _04051 EFB2_04052: EFB2_04052 - Soluble lytic murein transglycosylase, at 4,260,404 to 4,262,341 _04052 EFB2_04053: EFB2_04053 - Energy-dependent translational throttle protein EttA, at 4,262,548 to 4,264,215 _04053 EFB2_04054: EFB2_04054 - hypothetical protein, at 4,264,271 to 4,264,555 _04054 EFB2_04055: EFB2_04055 - Toxin HigB-2, at 4,264,557 to 4,264,889 _04055
Group Condition EFB2_04051 EFB2_04052 EFB2_04053 EFB2_04054 EFB2_04055
no phage control BHIS_CaCl2 no phage control +0.6 -0.3 +0.6 -3.2 +0.6
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.3 +0.1 -0.1 -1.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.0 +0.0 -0.8 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.4 -0.0 -0.1 -0.3 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.5 -0.1 -0.1 -0.3 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.0 -0.0 -0.3 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.0 -0.1 -0.8 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 +0.0 -0.1 -0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.1 -0.1 -0.5 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 -0.0 -0.1 -1.0 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 -0.0 -0.0 -0.3 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.0 +0.0 -0.5 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 -0.1 -0.4 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.0 -0.2 +0.3 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 +0.1 -0.2 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 -0.1 -0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.4 +0.1 -0.0 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.0 +0.1 +0.1 -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.0 -0.1 +0.4 -0.0
no phage control BHIS no phage control +0.2 -0.0 -0.0 -0.3 +0.2
mixed community no phage control BHIS no phage control with 14 member community +0.3 +0.1 -0.0 -0.1 -0.2
mixed community no phage control BHIS no phage control with 14 member community -0.2 +0.1 -0.1 +0.4 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.2 -0.3 +0.5 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.1 -0.2 +0.4 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.0 -0.2 +0.4 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 -0.1 +0.5 -0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.1 -0.1 +0.4 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.0 -0.1 -0.1 +0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.1 -0.1 +0.3 +0.2
mixed community no phage control BHIS no phage control with 14 member community +0.2 +0.1 -0.2 +0.6 +0.2
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