Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_04020 and EFB2_04021 are separated by 42 nucleotidesEFB2_04021 and EFB2_04022 are separated by 328 nucleotidesEFB2_04022 and EFB2_04023 are separated by 95 nucleotidesEFB2_04023 and EFB2_04024 are separated by 65 nucleotides EFB2_04020: EFB2_04020 - Isoleucine--tRNA ligase, at 4,224,626 to 4,227,442 _04020 EFB2_04021: EFB2_04021 - Bifunctional riboflavin kinase/FMN adenylyltransferase, at 4,227,485 to 4,228,426 _04021 EFB2_04022: EFB2_04022 - 30S ribosomal protein S20, at 4,228,755 to 4,229,018 _04022 EFB2_04023: EFB2_04023 - Transcriptional activator protein NhaR, at 4,229,114 to 4,230,013 _04023 EFB2_04024: EFB2_04024 - Na(+)/H(+) antiporter NhaA, at 4,230,079 to 4,231,245 _04024
Group Condition EFB2_04020 EFB2_04021 EFB2_04022 EFB2_04023 EFB2_04024
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. N.D. -0.1 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. N.D. -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. N.D. -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. N.D. -0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. N.D. N.D. -0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. N.D. -0.1 +0.1
no phage control BHIS no phage control N.D. N.D. N.D. -0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. N.D. -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. N.D. N.D. -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. N.D. -0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. N.D. -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. N.D. -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. N.D. -0.0 +0.2
no phage control BHIS no phage control N.D. N.D. N.D. -0.1 +0.2
mixed community no phage control BHIS no phage control with 14 member community N.D. N.D. N.D. -0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. N.D. +0.1 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. N.D. N.D. +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. N.D. +0.0 +0.2
no phage control BHIS no phage control N.D. N.D. N.D. +0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. N.D. -0.1 +0.3
mixed community no phage control BHIS no phage control with 14 member community N.D. N.D. N.D. +0.1 +0.2
no phage control BHIS_CaCl2 no phage control N.D. N.D. N.D. +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. N.D. +0.0 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. N.D. -0.0 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. N.D. +0.0 +0.2
no phage control BHIS_CaCl2 no phage control N.D. N.D. N.D. -0.0 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. N.D. +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. N.D. +0.0 +0.3
mixed community no phage control BHIS no phage control with 14 member community N.D. N.D. N.D. +0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. N.D. +0.1 +0.3
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