Fitness for 5 genes in Escherichia fergusonii Becca

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	EFB2_04008	EFB2_04009	EFB2_04010	EFB2_04011	EFB2_04012
no phage control	BHIS no phage control	+0.1	-0.1	-0.1	-0.4	-0.3
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	+0.1	-0.1	-0.0	-0.3	-0.4
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)	-0.0	-0.1	-0.1	-0.1	-0.3
phage monoculture	BHIS_CaCl2 with hk phage cocktail 1 MOI	+0.1	-0.1	-0.2	-0.1	-0.3
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	+0.1	-0.1	-0.2	-0.1	-0.2
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	+0.1	-0.2	-0.1	-0.1	-0.2
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	+0.1	-0.1	+0.2	-0.1	-0.5
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae	-0.0	+0.0	+0.3	-0.1	-0.5
mixed community no phage control	BHIS no phage control with 14 member community	+0.0	+0.0	-0.1	-0.3	-0.1
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	+0.1	-0.2	+0.1	-0.1	-0.2
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae	-0.1	-0.1	+0.0	-0.2	+0.1
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	-0.0	+0.2	-0.2	-0.0	-0.2
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	+0.1	+0.0	-0.3	-0.0	-0.1
mixed community no phage control	BHIS_CaCl2 no phage control with 14 member community	-0.1	-0.1	-0.1	+0.0	+0.1
mixed community no phage control	BHIS no phage control with 14 member community plus Klebsiella pneumoniae	-0.0	+0.1	+0.1	-0.3	-0.0
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	+0.2	+0.2	-0.0	-0.0	-0.5
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae	+0.1	-0.0	+0.1	-0.1	-0.2
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	+0.1	+0.1	-0.2	+0.1	-0.2
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)	+0.0	-0.2	+0.2	-0.1	-0.1
no phage control	BHIS_CaCl2 no phage control	+0.2	-0.3	-0.7	+0.6	+0.1
mixed community no phage control	BHIS no phage control with 14 member community	+0.0	+0.1	-0.1	-0.2	+0.0
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	-0.1	-0.0	+0.1	-0.1	+0.1
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	+0.0	+0.1	-0.2	+0.3	-0.3
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)	+0.1	+0.1	-0.3	+0.1	-0.1
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	+0.2	+0.1	+0.1	-0.1	-0.2
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	-0.1	+0.1	-0.3	+0.3	+0.1
no phage control	BHIS no phage control	+0.0	+0.1	+0.0	-0.2	+0.2
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	+0.1	+0.1	-0.1	+0.2	-0.2
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)	+0.1	+0.2	+0.3	-0.0	-0.3
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; 14 member community	+0.0	+0.0	+0.2	+0.2	-0.1