Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03998 and EFB2_03999 overlap by 8 nucleotidesEFB2_03999 and EFB2_04000 are separated by 107 nucleotidesEFB2_04000 and EFB2_04001 are separated by 58 nucleotidesEFB2_04001 and EFB2_04002 overlap by 4 nucleotides EFB2_03998: EFB2_03998 - Glutathione-regulated potassium-efflux system protein KefC, at 4,199,804 to 4,201,666 _03998 EFB2_03999: EFB2_03999 - Glutathione-regulated potassium-efflux system ancillary protein KefF, at 4,201,659 to 4,202,189 _03999 EFB2_04000: EFB2_04000 - Inner membrane metabolite transport protein YgcS, at 4,202,297 to 4,203,628 _04000 EFB2_04001: EFB2_04001 - Ferredoxin-like protein FixX, at 4,203,687 to 4,203,974 _04001 EFB2_04002: EFB2_04002 - Thiamine thiazole synthase, at 4,203,971 to 4,205,257 _04002
Group Condition EFB2_03998 EFB2_03999 EFB2_04000 EFB2_04001 EFB2_04002
no phage control BHIS_CaCl2 no phage control +0.1 +0.2 +0.0 -1.3 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.0 -0.1 -0.4 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.2 -0.1 -0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.0 +0.0 -0.4 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.3 -0.0 -0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.2 +0.1 +0.1 -0.0
no phage control BHIS_CaCl2 no phage control +0.2 -0.0 +0.1 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.1 +0.1 -0.4 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.3 -0.0 -0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 +0.0 -0.3 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 +0.1 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.4 +0.0 -0.4 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.0 -0.2 +0.1 +0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.3 +0.1 -0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 +0.4 +0.1 -0.4 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.2 -0.1 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.4 +0.0 -0.4 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 +0.4 +0.0 -0.1 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 +0.2 +0.0 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.1 -0.0 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 +0.4 -0.1 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 -0.1 +0.0 +0.3 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 +0.2 +0.0 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.4 -0.0 -0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.1 +0.0 +0.6 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.2 +0.1 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.2 -0.0 +0.3 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.4 +0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.2 -0.1 +0.4 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.4 +0.1 +0.3 -0.0
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EFB2_03998
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EFB2_03999
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EFB2_04001
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EFB2_04002
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