Fitness for 5 genes in Escherichia fergusonii Becca

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	EFB2_03996	EFB2_03997	EFB2_03998	EFB2_03999	EFB2_04000
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)	-2.5	+0.1	+0.1	-0.0	+0.1
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)	-1.3	-0.2	-0.0	-0.3	-0.0
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	-2.0	-0.1	+0.1	+0.2	-0.1
mixed community no phage control	BHIS no phage control with 14 member community	-1.5	+0.0	+0.0	-0.0	-0.1
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	-1.5	+0.0	+0.0	+0.1	+0.1
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	-1.5	-0.0	-0.1	+0.3	+0.0
phage monoculture	BHIS_CaCl2 with hk phage cocktail 1 MOI	-1.3	+0.1	+0.0	-0.1	+0.1
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	-1.1	+0.2	-0.1	-0.2	+0.1
no phage control	BHIS_CaCl2 no phage control	-1.4	+0.3	+0.1	+0.2	+0.0
mixed community no phage control	BHIS_CaCl2 no phage control with 14 member community	-1.1	+0.1	+0.0	+0.2	+0.0
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	-0.7	+0.2	-0.1	-0.2	-0.1
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)	-0.6	+0.1	-0.1	-0.2	+0.1
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)	-1.0	+0.0	+0.0	+0.3	-0.0
no phage control	BHIS no phage control	-0.9	+0.2	-0.0	+0.1	-0.0
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)	-1.1	+0.2	+0.1	+0.4	+0.0
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae	-0.8	+0.1	+0.2	+0.1	+0.0
no phage control	BHIS_CaCl2 no phage control	-0.6	+0.1	+0.2	-0.0	+0.1
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	-0.1	-0.5	+0.1	+0.2	+0.1
mixed community no phage control	BHIS_CaCl2 no phage control with 14 member community	-0.4	+0.1	+0.0	+0.4	-0.1
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	-0.3	-0.1	+0.1	+0.4	+0.0
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	+0.7	-0.2	+0.0	+0.1	+0.1
mixed community no phage control	BHIS no phage control with 14 member community	+0.7	+0.1	-0.0	-0.2	+0.1
mixed community no phage control	BHIS no phage control with 14 member community plus Klebsiella pneumoniae	+0.8	-0.1	-0.0	+0.1	+0.0
no phage control	BHIS no phage control	+1.0	-0.2	+0.0	-0.1	+0.0
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	+1.0	+0.0	+0.0	-0.0	+0.1
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	+1.0	-0.2	+0.0	+0.2	+0.0
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	+1.0	-0.0	+0.1	-0.0	+0.0
no phage control	BHIS_CaCl2 no phage control	+1.0	+0.1	+0.1	+0.1	+0.0
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	+1.3	-0.4	+0.1	+0.4	-0.0
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	+0.8	+0.3	+0.0	+0.4	+0.1