Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03978 and EFB2_03979 overlap by 17 nucleotidesEFB2_03979 and EFB2_03980 are separated by 113 nucleotidesEFB2_03980 and EFB2_03981 are separated by 85 nucleotidesEFB2_03981 and EFB2_03982 are separated by 338 nucleotides EFB2_03978: EFB2_03978 - hypothetical protein, at 4,175,744 to 4,177,354 _03978 EFB2_03979: EFB2_03979 - Thiamine import ATP-binding protein ThiQ, at 4,177,338 to 4,178,036 _03979 EFB2_03980: EFB2_03980 - Inner membrane protein YabI, at 4,178,150 to 4,178,914 _03980 EFB2_03981: EFB2_03981 - Arabinose operon regulatory protein, at 4,179,000 to 4,179,878 _03981 EFB2_03982: EFB2_03982 - Ribulokinase, at 4,180,217 to 4,181,917 _03982
Group Condition EFB2_03978 EFB2_03979 EFB2_03980 EFB2_03981 EFB2_03982
no phage control BHIS no phage control -0.0 -0.1 -0.5 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.0 -0.3 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.0 -0.4 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 -0.1 -0.3 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.0 -0.4 -0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.0 -0.1 -0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.2 -0.1 +0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.1 -0.2 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.0 -0.2 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.2 +0.1 -0.1 -0.1
no phage control BHIS_CaCl2 no phage control +0.0 +0.1 +0.1 -0.1 -0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 +0.1 +0.1 -0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.0 -0.2 +0.0 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.0 -0.1 +0.2 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.0 -0.1 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.2 -0.0 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.1 -0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.0 +0.2 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.0 +0.2 -0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community -0.0 +0.1 +0.0 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 -0.1 +0.3 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.1 +0.3 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.3 +0.0 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.0 +0.4 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.0 +0.3 +0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.1 +0.1 +0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.1 +0.1 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.2 +0.3 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.0 +0.3 +0.2 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.0 +0.4 +0.1 +0.0
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