Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03923 and EFB2_03924 are separated by 105 nucleotidesEFB2_03924 and EFB2_03925 are separated by 15 nucleotidesEFB2_03925 and EFB2_03926 are separated by 37 nucleotidesEFB2_03926 and EFB2_03927 are separated by 174 nucleotides EFB2_03923: EFB2_03923 - hypothetical protein, at 4,110,878 to 4,111,186 _03923 EFB2_03924: EFB2_03924 - Polyamine aminopropyltransferase, at 4,111,292 to 4,112,158 _03924 EFB2_03925: EFB2_03925 - S-adenosylmethionine decarboxylase proenzyme, at 4,112,174 to 4,112,968 _03925 EFB2_03926: EFB2_03926 - hypothetical protein, at 4,113,006 to 4,113,368 _03926 EFB2_03927: EFB2_03927 - Aconitate hydratase B, at 4,113,543 to 4,116,140 _03927
Group Condition EFB2_03923 EFB2_03924 EFB2_03925 EFB2_03926 EFB2_03927
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 -0.2 -0.0 -0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.1 -0.0 -0.1 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 -0.2 +0.1 -0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.4 +0.0 +0.1 -0.0 -0.3
mixed community no phage control BHIS no phage control with 14 member community -0.5 +0.2 +0.1 -0.1 -0.3
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.2 -0.0 +0.2 -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 +0.0 +0.0 -0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.0 +0.1 -0.3 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 -0.0 +0.0 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.3 +0.0 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 -0.0 -0.0 +0.1 -0.6
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.1 -0.0 -0.1 -0.3
mixed community no phage control BHIS no phage control with 14 member community -0.3 -0.0 +0.0 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 +0.1 -0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.0 +0.0 +0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 +0.0 -0.1 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.3 -0.1 +0.1 -0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 -0.1 -0.0 -0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.1 -0.0 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.0 -0.0 -0.1 +0.4
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 -0.1 +0.0 -0.3 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 +0.1 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.1 -0.0 +0.1 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 -0.2 +0.0 +0.1 +0.3
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.2 +0.0 +0.0 -0.2 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 -0.0 +0.1 -0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.1 +0.0 -0.1 +0.3
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 +0.0 +0.0 -0.1 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 +0.1 +0.1 +0.3
no phage control BHIS_CaCl2 no phage control +0.3 -0.1 -0.1 +0.2 +0.3
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EFB2_03923
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EFB2_03924
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EFB2_03927
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