Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03909 and EFB2_03910 are separated by 111 nucleotidesEFB2_03910 and EFB2_03911 are separated by 11 nucleotidesEFB2_03911 and EFB2_03912 are separated by 81 nucleotidesEFB2_03912 and EFB2_03913 are separated by 68 nucleotides EFB2_03909: EFB2_03909 - putative fimbrial-like protein YadC, at 4,096,405 to 4,097,670 _03909 EFB2_03910: EFB2_03910 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 4,097,782 to 4,098,576 _03910 EFB2_03911: EFB2_03911 - Pantothenate synthetase, at 4,098,588 to 4,099,439 _03911 EFB2_03912: EFB2_03912 - hypothetical protein, at 4,099,521 to 4,099,724 _03912 EFB2_03913: EFB2_03913 - ISNCY family transposase ISRor2, at 4,099,793 to 4,100,725 _03913
Group Condition EFB2_03909 EFB2_03910 EFB2_03911 EFB2_03912 EFB2_03913
no phage control BHIS_CaCl2 no phage control -0.1 -0.8 -2.8 -0.7 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.3 -3.1 +0.2 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.2 -2.8 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.2 -2.9 -0.0 +0.0
mixed community no phage control BHIS no phage control with 14 member community +0.0 -0.0 -2.8 -0.0 +0.0
no phage control BHIS no phage control +0.0 +0.0 -2.4 -0.3 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.2 -3.2 +0.1 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.0 -2.5 -0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community -0.1 +0.0 -2.7 -0.0 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.0 -2.4 -0.1 -0.1
no phage control BHIS no phage control +0.1 -0.2 -2.5 +0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.1 -2.5 -0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.2 -2.3 -0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.0 -2.5 +0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.0 -2.5 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 -2.6 -0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.2 -2.3 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 -2.3 +0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 -2.4 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.1 -2.2 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.1 -2.0 -0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.2 -2.1 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.2 -0.0 -2.1 -0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.2 -2.3 +0.0 -0.0
mixed community no phage control BHIS no phage control with 14 member community +0.0 +0.2 -2.4 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.2 +0.1 -2.2 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.1 +0.2 -2.0 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.1 -2.2 +0.2 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.2 -2.3 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.2 +0.1 -2.1 +0.1 -0.0
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