Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03898 and EFB2_03899 are separated by 177 nucleotidesEFB2_03899 and EFB2_03900 are separated by 36 nucleotidesEFB2_03900 and EFB2_03901 are separated by 92 nucleotidesEFB2_03901 and EFB2_03902 overlap by 4 nucleotides EFB2_03898: EFB2_03898 - Sugar fermentation stimulation protein A, at 4,085,871 to 4,086,575 _03898 EFB2_03899: EFB2_03899 - RNA polymerase-binding transcription factor DksA, at 4,086,753 to 4,087,208 _03899 EFB2_03900: EFB2_03900 - Glutamyl-Q tRNA(Asp) synthetase, at 4,087,245 to 4,088,171 _03900 EFB2_03901: EFB2_03901 - Poly(A) polymerase I, at 4,088,264 to 4,089,628 _03901 EFB2_03902: EFB2_03902 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 4,089,625 to 4,090,104 _03902
Group Condition EFB2_03898 EFB2_03899 EFB2_03900 EFB2_03901 EFB2_03902
no phage control BHIS_CaCl2 no phage control +0.3 -3.5 -0.5 -1.9 -2.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 -3.6 -0.2 -0.6 -3.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -4.1 -0.0 -0.5 -2.9
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -3.8 -0.1 -0.5 -2.9
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 -3.6 -0.1 -0.6 -2.9
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -3.7 -0.0 -0.4 -3.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -3.7 -0.0 -0.5 -3.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.0 -3.6 +0.0 -0.5 -2.9
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -3.7 +0.0 -0.2 -3.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 -3.7 +0.0 -0.4 -3.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -3.6 +0.0 -0.1 -3.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -3.4 -0.0 -0.3 -3.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -3.5 -0.0 -0.2 -3.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -3.4 +0.1 -0.3 -3.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -3.5 +0.1 -0.3 -3.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 -3.3 +0.0 -0.5 -3.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 -3.3 -0.0 -0.5 -2.9
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 -3.3 -0.0 -0.2 -2.9
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.4 -2.7 -0.1 -0.1 -3.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -3.0 -0.0 -0.1 -3.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -3.2 +0.2 -0.2 -2.7
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -2.2 -0.1 -0.4 -3.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 -3.3 +0.0 -0.6 -1.9
no phage control BHIS no phage control +0.0 -1.9 +0.1 -0.7 -3.0
no phage control BHIS no phage control +0.0 -1.9 -0.0 -0.5 -3.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -4.1 +0.1 -0.3 -1.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -1.9 +0.0 -0.3 -3.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -2.2 +0.0 -0.0 -3.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -1.7 -0.1 -0.4 -3.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 -3.5 +0.1 -0.6 -1.1
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