Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03894 and EFB2_03895 are separated by 219 nucleotidesEFB2_03895 and EFB2_03896 are separated by 93 nucleotidesEFB2_03896 and EFB2_03897 are separated by 73 nucleotidesEFB2_03897 and EFB2_03898 are separated by 14 nucleotides EFB2_03894: EFB2_03894 - Ferrichrome outer membrane transporter/phage receptor, at 4,077,717 to 4,079,975 _03894 EFB2_03895: EFB2_03895 - Penicillin-binding protein 1B, at 4,080,195 to 4,082,729 _03895 EFB2_03896: EFB2_03896 - ATP-dependent RNA helicase HrpB, at 4,082,823 to 4,085,252 _03896 EFB2_03897: EFB2_03897 - RNA 2',3'-cyclic phosphodiesterase, at 4,085,326 to 4,085,856 _03897 EFB2_03898: EFB2_03898 - Sugar fermentation stimulation protein A, at 4,085,871 to 4,086,575 _03898
Group Condition EFB2_03894 EFB2_03895 EFB2_03896 EFB2_03897 EFB2_03898
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.1 -0.1 -0.2 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.1 +0.0 -0.1 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.2 -0.0 -0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.1 -0.0 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.1 +0.1 -0.3 -0.0
no phage control BHIS no phage control -0.0 -0.0 -0.0 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 +0.0 -0.2 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.0 -0.2 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.0 -0.1 -0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.2 -0.0 -0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 -0.0 -0.2 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.0 +0.1 +0.0 -0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.2 -0.0 -0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.1 -0.0 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.1 -0.0 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 -0.0 -0.2 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.1 -0.0 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.1 -0.0 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.0 -0.0 -0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.0 +0.1 -0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 -0.1 +0.0 +0.1 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 +0.0 -0.0 -0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.0 -0.1 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 +0.0 +0.0 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.0 -0.1 -0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 +0.1 +0.1 -0.1 +0.1
no phage control BHIS_CaCl2 no phage control +0.0 -0.3 +0.1 -0.0 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.1 +0.0 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.0 -0.1 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.1 +0.0 +0.1 +0.2
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