Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03878 and EFB2_03879 are separated by 30 nucleotidesEFB2_03879 and EFB2_03880 are separated by 317 nucleotidesEFB2_03880 and EFB2_03881 overlap by 63 nucleotidesEFB2_03881 and EFB2_03882 overlap by 32 nucleotides EFB2_03878: EFB2_03878 - Bifunctional uridylyltransferase/uridylyl-removing enzyme, at 4,059,663 to 4,062,335 _03878 EFB2_03879: EFB2_03879 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 4,062,366 to 4,063,190 _03879 EFB2_03880: EFB2_03880 - hypothetical protein, at 4,063,508 to 4,063,894 _03880 EFB2_03881: EFB2_03881 - hypothetical protein, at 4,063,832 to 4,063,978 _03881 EFB2_03882: EFB2_03882 - Carbohydrate diacid regulator, at 4,063,947 to 4,065,104 _03882
Group Condition EFB2_03878 EFB2_03879 EFB2_03880 EFB2_03881 EFB2_03882
no phage control BHIS_CaCl2 no phage control N.D. N.D. -0.1 -0.9 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -0.0 -0.9 -0.0
no phage control BHIS_CaCl2 no phage control N.D. N.D. -0.1 -1.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -0.0 -0.6 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -0.2 -0.5 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -0.1 -0.5 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. N.D. -0.0 -0.4 -0.1
mixed community no phage control BHIS no phage control with 14 member community N.D. N.D. +0.2 -0.4 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. +0.0 -0.3 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. +0.1 -0.5 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. +0.1 -0.3 -0.1
no phage control BHIS no phage control N.D. N.D. -0.2 -0.3 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. +0.1 -0.4 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. +0.2 -0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. -0.3 +0.3 -0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. +0.0 -0.3 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. +0.1 -0.3 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. N.D. -0.3 +0.5 -0.1
no phage control BHIS_CaCl2 no phage control N.D. N.D. -0.2 +0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. -0.1 +0.4 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. N.D. -0.3 +0.8 -0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. N.D. -0.0 +0.5 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. -0.0 +0.4 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. N.D. -0.1 +0.6 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. +0.1 +0.6 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. N.D. +0.0 +0.6 +0.1
mixed community no phage control BHIS no phage control with 14 member community N.D. N.D. +0.2 +0.5 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. N.D. -0.1 +0.7 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. N.D. +0.1 +0.8 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. N.D. -0.0 +0.9 +0.0
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EFB2_03878
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EFB2_03882
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