Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03861 and EFB2_03862 overlap by 4 nucleotidesEFB2_03862 and EFB2_03863 overlap by 1 nucleotidesEFB2_03863 and EFB2_03864 are separated by 3 nucleotidesEFB2_03864 and EFB2_03865 are separated by 104 nucleotides EFB2_03861: EFB2_03861 - Ribonuclease HII, at 4,043,489 to 4,044,085 _03861 EFB2_03862: EFB2_03862 - Lipid-A-disaccharide synthase, at 4,044,082 to 4,045,230 _03862 EFB2_03863: EFB2_03863 - Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase, at 4,045,230 to 4,046,018 _03863 EFB2_03864: EFB2_03864 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ, at 4,046,022 to 4,046,477 _03864 EFB2_03865: EFB2_03865 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 4,046,582 to 4,047,607 _03865
Group Condition EFB2_03861 EFB2_03862 EFB2_03863 EFB2_03864 EFB2_03865
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.8 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.7 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.6 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with 14 member community -0.6 N.D. N.D. N.D. N.D.
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.6 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.5 N.D. N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.5 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 N.D. N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 N.D. N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 N.D. N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 N.D. N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.3 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 N.D. N.D. N.D. N.D.
no phage control BHIS_CaCl2 no phage control -0.2 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.2 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 N.D. N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.2 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with 14 member community -0.2 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 N.D. N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.2 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with 14 member community -0.2 N.D. N.D. N.D. N.D.
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.2 N.D. N.D. N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 N.D. N.D. N.D. N.D.
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