Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03832 and EFB2_03833 are separated by 48 nucleotidesEFB2_03833 and EFB2_03834 are separated by 77 nucleotidesEFB2_03834 and EFB2_03835 are separated by 216 nucleotidesEFB2_03835 and EFB2_03836 overlap by 4 nucleotides EFB2_03832: EFB2_03832 - Membrane-bound lytic murein transglycosylase D, at 4,014,595 to 4,015,815 _03832 EFB2_03833: EFB2_03833 - putative methyltransferase YcgJ, at 4,015,864 to 4,016,634 _03833 EFB2_03834: EFB2_03834 - hypothetical protein, at 4,016,712 to 4,017,536 _03834 EFB2_03835: EFB2_03835 - HTH-type transcriptional regulator DmlR, at 4,017,753 to 4,018,667 _03835 EFB2_03836: EFB2_03836 - 2,5-diketo-D-gluconic acid reductase B, at 4,018,664 to 4,019,467 _03836
Group Condition EFB2_03832 EFB2_03833 EFB2_03834 EFB2_03835 EFB2_03836
no phage control BHIS_CaCl2 no phage control +0.1 +0.3 -0.6 +0.0 -0.6
no phage control BHIS no phage control -0.1 -0.2 -0.1 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.2 -0.0 -0.1 +0.1
no phage control BHIS no phage control -0.1 -0.1 -0.1 +0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.2 -0.0 +0.1 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 +0.1 +0.0 -0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.0 +0.0 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 -0.0 +0.1 +0.0 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.2 -0.1 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.0 -0.1 -0.2 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.1 -0.1 +0.1 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.1 +0.2 -0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.0 -0.1 -0.1 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.0 +0.1 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 -0.0 -0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.1 +0.1 +0.0 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 +0.1 -0.1 +0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.0 -0.1 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.1 -0.1 +0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 +0.2 +0.0 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.1 +0.1 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.1 +0.0 +0.0 +0.2
no phage control BHIS_CaCl2 no phage control +0.1 +0.1 -0.0 +0.2 -0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 +0.1 -0.0 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 +0.2 -0.0 +0.2 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.0 +0.1 +0.0 +0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 -0.1 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.1 +0.0 -0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 +0.2 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.0 +0.1 +0.1 +0.1
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