Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03826 and EFB2_03827 are separated by 329 nucleotidesEFB2_03827 and EFB2_03828 are separated by 132 nucleotidesEFB2_03828 and EFB2_03829 are separated by 55 nucleotidesEFB2_03829 and EFB2_03830 overlap by 4 nucleotides EFB2_03826: EFB2_03826 - hypothetical protein, at 4,010,290 to 4,011,075 _03826 EFB2_03827: EFB2_03827 - tRNA-Asp, at 4,011,405 to 4,011,481 _03827 EFB2_03828: EFB2_03828 - DNA polymerase III subunit epsilon, at 4,011,614 to 4,012,354 _03828 EFB2_03829: EFB2_03829 - Ribonuclease HI, at 4,012,410 to 4,012,877 _03829 EFB2_03830: EFB2_03830 - hypothetical protein, at 4,012,874 to 4,013,596 _03830
Group Condition EFB2_03826 EFB2_03827 EFB2_03828 EFB2_03829 EFB2_03830
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.5 N.D. N.D. -1.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 N.D. N.D. -0.6 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.4 N.D. N.D. -0.5 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 N.D. N.D. -1.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.2 N.D. N.D. -0.7 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 N.D. N.D. -0.8 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.5 N.D. N.D. -0.3 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.1 N.D. N.D. -0.6 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 N.D. N.D. -0.7 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.2 N.D. N.D. -0.6 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 N.D. N.D. -0.3 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.4 N.D. N.D. -0.8 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.3 N.D. N.D. -0.3 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.3 N.D. N.D. -0.5 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 N.D. N.D. -0.6 +0.1
no phage control BHIS_CaCl2 no phage control +0.5 N.D. N.D. -0.7 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.6 N.D. N.D. -0.7 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.4 N.D. N.D. -0.4 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.5 N.D. N.D. -0.5 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.3 N.D. N.D. -0.3 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 N.D. N.D. -0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.4 N.D. N.D. -0.4 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.6 N.D. N.D. -0.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.6 N.D. N.D. -0.3 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.5 N.D. N.D. -0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.3 N.D. N.D. -0.3 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.6 N.D. N.D. -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.7 N.D. N.D. -0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.5 N.D. N.D. -0.2 +0.4
no phage control BHIS_CaCl2 no phage control -0.1 N.D. N.D. +1.9 -0.1
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EFB2_03830
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