Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03815 and EFB2_03816 are separated by 4 nucleotidesEFB2_03816 and EFB2_03817 overlap by 4 nucleotidesEFB2_03817 and EFB2_03818 are separated by 2 nucleotidesEFB2_03818 and EFB2_03819 are separated by 4 nucleotides EFB2_03815: EFB2_03815 - hypothetical protein, at 3,994,593 to 3,995,642 _03815 EFB2_03816: EFB2_03816 - hypothetical protein, at 3,995,647 to 3,996,939 _03816 EFB2_03817: EFB2_03817 - hypothetical protein, at 3,996,936 to 3,997,460 _03817 EFB2_03818: EFB2_03818 - hypothetical protein, at 3,997,463 to 3,998,809 _03818 EFB2_03819: EFB2_03819 - hypothetical protein, at 3,998,814 to 3,999,578 _03819
Group Condition EFB2_03815 EFB2_03816 EFB2_03817 EFB2_03818 EFB2_03819
no phage control BHIS_CaCl2 no phage control +0.0 -0.3 -0.6 -0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.2 -0.2 -0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.0 -0.3 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 -0.0 -0.1 -0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 -0.1 -0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.2 -0.1 -0.1 -0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.0 -0.1 -0.1 -0.2 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.1 -0.2 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 +0.0 -0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.0 -0.3 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.1 -0.0 -0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 +0.0 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.1 -0.1 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.1 -0.2 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.0 +0.1 -0.2 -0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 -0.2 +0.1 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.0 +0.0 -0.1 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.1 +0.1 -0.2 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.1 -0.1 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.3 -0.0 +0.0 -0.3
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.1 +0.1 -0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.1 +0.1 -0.2 +0.1
no phage control BHIS_CaCl2 no phage control +0.0 -0.1 +0.1 -0.1 +0.1
no phage control BHIS no phage control +0.0 -0.1 +0.3 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 +0.1 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.1 +0.2 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 -0.0 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.1 +0.3 -0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.1 +0.2 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.1 +0.1 +0.1 +0.1
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EFB2_03815
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EFB2_03816
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EFB2_03819
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