Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03781 and EFB2_03782 are separated by 91 nucleotidesEFB2_03782 and EFB2_03783 are separated by 260 nucleotidesEFB2_03783 and EFB2_03784 are separated by 56 nucleotidesEFB2_03784 and EFB2_03785 overlap by 4 nucleotides EFB2_03781: EFB2_03781 - hypothetical protein, at 3,963,371 to 3,964,615 _03781 EFB2_03782: EFB2_03782 - Xanthine phosphoribosyltransferase, at 3,964,707 to 3,965,165 _03782 EFB2_03783: EFB2_03783 - Cytosol non-specific dipeptidase, at 3,965,426 to 3,966,883 _03783 EFB2_03784: EFB2_03784 - Peptide chain release factor 1, at 3,966,940 to 3,967,554 _03784 EFB2_03785: EFB2_03785 - RNA-splicing ligase RtcB, at 3,967,551 to 3,968,690 _03785
Group Condition EFB2_03781 EFB2_03782 EFB2_03783 EFB2_03784 EFB2_03785
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.8 -0.3 -0.6 -0.5 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.9 -0.3 -0.4 -0.4 -0.1
no phage control BHIS_CaCl2 no phage control -2.6 +0.0 +1.1 +0.0 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.8 -0.4 -0.5 -0.3 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.9 +0.0 -0.7 -0.4 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -1.0 +0.1 -0.7 -0.3 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.9 -0.1 -0.8 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.7 -0.2 -0.4 -0.5 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -1.0 -0.3 -0.8 +0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.7 -0.3 -0.7 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.7 -0.2 -0.6 -0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.7 -0.2 -0.6 -0.3 -0.0
no phage control BHIS no phage control -0.8 +0.0 -0.6 -0.4 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.7 -0.1 -0.4 -0.4 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.9 -0.2 -0.8 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.8 +0.1 -0.7 -0.3 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.7 -0.0 -0.6 -0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.7 -0.1 -0.6 -0.3 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.4 -0.2 -0.7 -0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.6 -0.3 -0.4 -0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.6 -0.4 -0.5 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.6 -0.3 -0.6 -0.3 +0.1
no phage control BHIS_CaCl2 no phage control -0.9 -0.4 -0.6 +0.3 +0.1
no phage control BHIS no phage control -0.7 -0.1 -0.7 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.7 -0.2 -0.7 -0.1 +0.0
no phage control BHIS no phage control -0.6 +0.1 -0.9 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.8 +0.1 -0.9 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.7 -0.3 -0.5 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.8 +0.1 -0.6 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.7 +0.0 -0.8 +0.4 -0.1
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