Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03720 and EFB2_03721 are separated by 877 nucleotidesEFB2_03721 and EFB2_03722 are separated by 128 nucleotidesEFB2_03722 and EFB2_03723 are separated by 13 nucleotidesEFB2_03723 and EFB2_03724 are separated by 13 nucleotides EFB2_03720: EFB2_03720 - Cyclic di-GMP phosphodiesterase PdeL, at 3,893,213 to 3,894,301 _03720 EFB2_03721: EFB2_03721 - High-affinity choline transport protein, at 3,895,179 to 3,897,212 _03721 EFB2_03722: EFB2_03722 - HTH-type transcriptional regulator BetI, at 3,897,341 to 3,897,928 _03722 EFB2_03723: EFB2_03723 - NAD/NADP-dependent betaine aldehyde dehydrogenase, at 3,897,942 to 3,899,414 _03723 EFB2_03724: EFB2_03724 - Oxygen-dependent choline dehydrogenase, at 3,899,428 to 3,901,098 _03724
Group Condition EFB2_03720 EFB2_03721 EFB2_03722 EFB2_03723 EFB2_03724
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.1 -0.4 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.0 -0.2 -0.1 -0.0
no phage control BHIS no phage control -0.2 +0.0 -0.1 -0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.0 -0.4 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 +0.0 -0.1 -0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.2 -0.1 +0.1 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.0 +0.1 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.0 -0.4 +0.0 -0.0
mixed community no phage control BHIS no phage control with 14 member community -0.0 -0.0 -0.3 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.0 -0.1 -0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.0 -0.3 -0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.1 -0.2 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.0 -0.3 -0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.1 -0.1 +0.1 -0.0
no phage control BHIS no phage control +0.1 -0.0 -0.2 +0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.2 +0.2 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.0 +0.2 +0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.0 +0.2 +0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 +0.2 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.2 +0.3 -0.1 +0.0
no phage control BHIS_CaCl2 no phage control +0.0 -0.1 +0.2 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.1 +0.1 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.1 +0.3 -0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 +0.2 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.0 +0.2 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.1 +0.2 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.1 +0.2 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 -0.1 +0.0 -0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.0 +0.2 +0.1 +0.0
no phage control BHIS_CaCl2 no phage control +0.0 -0.0 +0.3 +0.3 -0.0
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EFB2_03720
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EFB2_03721
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EFB2_03723
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EFB2_03724
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