Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03705 and EFB2_03706 are separated by 159 nucleotidesEFB2_03706 and EFB2_03707 are separated by 238 nucleotidesEFB2_03707 and EFB2_03708 are separated by 100 nucleotidesEFB2_03708 and EFB2_03709 are separated by 185 nucleotides EFB2_03705: EFB2_03705 - 2-methylcitrate synthase, at 3,876,795 to 3,877,964 _03705 EFB2_03706: EFB2_03706 - 2-methylisocitrate lyase, at 3,878,124 to 3,879,014 _03706 EFB2_03707: EFB2_03707 - Propionate catabolism operon regulatory protein, at 3,879,253 to 3,880,839 _03707 EFB2_03708: EFB2_03708 - hypothetical protein, at 3,880,940 to 3,881,215 _03708 EFB2_03709: EFB2_03709 - Threonine efflux protein, at 3,881,401 to 3,882,036 _03709
Group Condition EFB2_03705 EFB2_03706 EFB2_03707 EFB2_03708 EFB2_03709
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.2 +0.0 +0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 -0.2 -0.0 -0.3 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 -0.1 -0.3 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.2 -0.1 -0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 +0.0 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 +0.0 -0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.2 -0.0 -0.2 +0.2
mixed community no phage control BHIS no phage control with 14 member community -0.0 +0.2 -0.1 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.2 +0.0 -0.1 +0.1
no phage control BHIS_CaCl2 no phage control +0.1 -0.2 -0.0 +0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.3 -0.1 -0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.0 -0.0 +0.3 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 -0.0 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.2 -0.1 +0.4 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.1 +0.1 -0.2 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 +0.2 -0.0 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.1 +0.1 +0.2 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 -0.1 -0.3 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.2 -0.1 +0.4 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.1 -0.0 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.0 +0.1 +0.3 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.1 +0.1 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.0 -0.0 +0.4 -0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 +0.0 +0.0 +0.4 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.2 +0.2 -0.1 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.2 -0.1 +0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.3 +0.1 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.1 +0.0 +0.4 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.0 +0.1 +0.3 +0.1
no phage control BHIS_CaCl2 no phage control +0.1 +0.2 +0.2 +0.6 -0.2
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