Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03687 and EFB2_03688 are separated by 12 nucleotidesEFB2_03688 and EFB2_03689 are separated by 607 nucleotidesEFB2_03689 and EFB2_03690 are separated by 9 nucleotidesEFB2_03690 and EFB2_03691 are separated by 34 nucleotides EFB2_03687: EFB2_03687 - Taurine import ATP-binding protein TauB, at 3,855,085 to 3,855,852 _03687 EFB2_03688: EFB2_03688 - Taurine-binding periplasmic protein, at 3,855,865 to 3,856,827 _03688 EFB2_03689: EFB2_03689 - N-acetyl-alpha-D-glucosaminyl L-malate deacetylase 1, at 3,857,435 to 3,858,106 _03689 EFB2_03690: EFB2_03690 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 3,858,116 to 3,859,312 _03690 EFB2_03691: EFB2_03691 - Bifunctional protein GlmU, at 3,859,347 to 3,859,871 _03691
Group Condition EFB2_03687 EFB2_03688 EFB2_03689 EFB2_03690 EFB2_03691
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 -0.1 +0.0 -0.7
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.1 -0.2 +0.3 -0.8
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.0 -0.1 +0.1 -0.8
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 -0.1 -0.3 +0.1 -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.0 -0.0 -0.2 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 -0.4 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.1 +0.3 +0.1 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.2 +0.2 -0.0 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.4 -0.1 +0.2 +0.0 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 +0.0 +0.1 +0.1 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 -0.0 +0.0 +0.1 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.2 -0.3 +0.0 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.1 +0.2 -0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.0 +0.2 +0.0 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.1 +0.1 +0.1 -0.3
mixed community no phage control BHIS no phage control with 14 member community +0.2 -0.0 +0.1 +0.0 -0.5
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 +0.2 +0.0 -0.4
mixed community no phage control BHIS no phage control with 14 member community -0.1 +0.1 -0.3 +0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.2 +0.3 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.1 +0.1 +0.2 -0.3
no phage control BHIS no phage control +0.2 -0.1 -0.1 -0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 +0.2 +0.0 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 +0.0 +0.4 -0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 +0.2 +0.1 -0.2 -0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.1 +0.1 -0.1 +0.3
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 -0.1 -0.1 +0.1 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 +0.2 +0.0 +0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.0 +0.3 +0.1 +0.2
no phage control BHIS_CaCl2 no phage control -0.1 -0.1 +0.4 +0.0 +0.3
no phage control BHIS_CaCl2 no phage control +0.3 +0.0 -0.0 +0.2 +0.9
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