Fitness for 5 genes in Escherichia fergusonii Becca

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	EFB2_03640	EFB2_03641	EFB2_03642	EFB2_03643	EFB2_03644
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	N.D.	N.D.	N.D.	N.D.	-0.6
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	N.D.	N.D.	N.D.	N.D.	-0.5
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	N.D.	N.D.	N.D.	N.D.	-0.4
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	N.D.	N.D.	N.D.	N.D.	-0.4
no phage control	BHIS no phage control	N.D.	N.D.	N.D.	N.D.	-0.4
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	N.D.	N.D.	N.D.	N.D.	-0.4
no phage control	BHIS_CaCl2 no phage control	N.D.	N.D.	N.D.	N.D.	-0.4
no phage control	BHIS no phage control	N.D.	N.D.	N.D.	N.D.	-0.4
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	N.D.	N.D.	N.D.	N.D.	-0.4
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae	N.D.	N.D.	N.D.	N.D.	-0.4
phage monoculture	BHIS_CaCl2 with hk phage cocktail 1 MOI	N.D.	N.D.	N.D.	N.D.	-0.4
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)	N.D.	N.D.	N.D.	N.D.	-0.4
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)	N.D.	N.D.	N.D.	N.D.	-0.3
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)	N.D.	N.D.	N.D.	N.D.	-0.3
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	N.D.	N.D.	N.D.	N.D.	-0.3
no phage control	BHIS no phage control	N.D.	N.D.	N.D.	N.D.	-0.3
phage monoculture	BHIS_CaCl2 with hk phage cocktail 1 MOI	N.D.	N.D.	N.D.	N.D.	-0.3
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	N.D.	N.D.	N.D.	N.D.	-0.3
phage monoculture	BHIS_CaCl2 with hk phage cocktail 1 MOI	N.D.	N.D.	N.D.	N.D.	-0.3
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)	N.D.	N.D.	N.D.	N.D.	-0.3
mixed community no phage control	BHIS no phage control with 14 member community	N.D.	N.D.	N.D.	N.D.	-0.3
mixed community no phage control	BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae	N.D.	N.D.	N.D.	N.D.	-0.3
mixed community no phage control	BHIS_CaCl2 no phage control with 14 member community	N.D.	N.D.	N.D.	N.D.	-0.3
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	N.D.	N.D.	N.D.	N.D.	-0.2
no phage control	BHIS_CaCl2 no phage control	N.D.	N.D.	N.D.	N.D.	-0.2
mixed community no phage control	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)	N.D.	N.D.	N.D.	N.D.	-0.2
phage mixed community	phage mixed community; hk phage cocktail 1 MOI; 14 member community	N.D.	N.D.	N.D.	N.D.	-0.2
mixed community no phage control	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)	N.D.	N.D.	N.D.	N.D.	-0.2
mixed community no phage control	BHIS no phage control with 14 member community plus Klebsiella pneumoniae	N.D.	N.D.	N.D.	N.D.	+0.2
no phage control	BHIS_CaCl2 no phage control	N.D.	N.D.	N.D.	N.D.	+0.6