Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03630 and EFB2_03631 are separated by 127 nucleotidesEFB2_03631 and EFB2_03632 are separated by 167 nucleotidesEFB2_03632 and EFB2_03633 overlap by 38 nucleotidesEFB2_03633 and EFB2_03634 are separated by 53 nucleotides EFB2_03630: EFB2_03630 - Inner membrane transport protein YajR, at 3,796,782 to 3,798,146 _03630 EFB2_03631: EFB2_03631 - hypothetical protein, at 3,798,274 to 3,798,765 _03631 EFB2_03632: EFB2_03632 - 2-dehydropantoate 2-reductase, at 3,798,933 to 3,799,844 _03632 EFB2_03633: EFB2_03633 - Protein/nucleic acid deglycase 3, at 3,799,807 to 3,800,397 _03633 EFB2_03634: EFB2_03634 - tRNA sulfurtransferase, at 3,800,451 to 3,801,890 _03634
Group Condition EFB2_03630 EFB2_03631 EFB2_03632 EFB2_03633 EFB2_03634
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.4 -0.2 -0.2 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.6 -0.3 +0.1 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.2 -0.2 -0.2 -0.5
no phage control BHIS_CaCl2 no phage control -0.1 -0.4 -0.3 +0.1 -0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.0 -0.3 -0.3 +0.1 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.3 -0.2 -0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.1 -0.1 -0.2 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.1 -0.3 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 -0.1 -0.2 -0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.3 -0.1 -0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 -0.2 -0.2 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.3 -0.3 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.3 -0.3 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 -0.0 -0.3 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 -0.1 -0.2 -0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.4 -0.1 +0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 -0.3 -0.2 +0.2 -0.3
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.3 -0.2 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.3 -0.0 +0.2 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 -0.3 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.4 -0.1 +0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.3 -0.3 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 -0.2 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.0 -0.2 +0.3 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.2 -0.1 +0.2 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 -0.3 +0.1 -0.2
mixed community no phage control BHIS no phage control with 14 member community +0.1 -0.1 -0.1 +0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.1 -0.0 +0.3 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 +0.1 -0.1 +0.3 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.2 -0.2 +0.4 -0.1
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