Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03629 and EFB2_03630 are separated by 148 nucleotidesEFB2_03630 and EFB2_03631 are separated by 127 nucleotidesEFB2_03631 and EFB2_03632 are separated by 167 nucleotidesEFB2_03632 and EFB2_03633 overlap by 38 nucleotides EFB2_03629: EFB2_03629 - Protoheme IX farnesyltransferase, at 3,795,743 to 3,796,633 _03629 EFB2_03630: EFB2_03630 - Inner membrane transport protein YajR, at 3,796,782 to 3,798,146 _03630 EFB2_03631: EFB2_03631 - hypothetical protein, at 3,798,274 to 3,798,765 _03631 EFB2_03632: EFB2_03632 - 2-dehydropantoate 2-reductase, at 3,798,933 to 3,799,844 _03632 EFB2_03633: EFB2_03633 - Protein/nucleic acid deglycase 3, at 3,799,807 to 3,800,397 _03633
Group Condition EFB2_03629 EFB2_03630 EFB2_03631 EFB2_03632 EFB2_03633
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.2 -0.4 -0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.0 -0.6 -0.3 +0.1
no phage control BHIS_CaCl2 no phage control +0.2 -0.1 -0.4 -0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 -0.1 -0.2 -0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.1 -0.2 -0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 -0.1 -0.1 -0.3 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.1 -0.3 -0.3 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.1 -0.3 -0.2 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 -0.1 -0.2 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.0 -0.3 -0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.1 -0.3 -0.1 -0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.0 -0.0 -0.3 -0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 +0.1 -0.1 -0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.1 -0.3 -0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.1 -0.1 -0.2 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.1 -0.4 -0.1 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.2 -0.0 -0.3 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 -0.1 -0.3 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 +0.0 -0.3 -0.2 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.0 -0.4 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 +0.0 +0.0 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 +0.0 -0.2 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 -0.2 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 -0.2 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.1 +0.1 -0.3 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 +0.1 -0.0 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.0 +0.1 -0.1 +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.2 +0.0 -0.0 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.1 +0.0 -0.1 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.1 +0.2 -0.2 +0.4
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EFB2_03629
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EFB2_03633
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