Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03624 and EFB2_03625 are separated by 459 nucleotidesEFB2_03625 and EFB2_03626 are separated by 21 nucleotidesEFB2_03626 and EFB2_03627 overlap by 11 nucleotidesEFB2_03627 and EFB2_03628 overlap by 1 nucleotides EFB2_03624: EFB2_03624 - Anhydromuropeptide permease, at 3,789,903 to 3,791,378 _03624 EFB2_03625: EFB2_03625 - Cytochrome bo(3) ubiquinol oxidase subunit 2, at 3,791,838 to 3,792,785 _03625 EFB2_03626: EFB2_03626 - Cytochrome bo(3) ubiquinol oxidase subunit 1, at 3,792,807 to 3,794,798 _03626 EFB2_03627: EFB2_03627 - Cytochrome bo(3) ubiquinol oxidase subunit 3, at 3,794,788 to 3,795,402 _03627 EFB2_03628: EFB2_03628 - Cytochrome bo(3) ubiquinol oxidase subunit 4, at 3,795,402 to 3,795,731 _03628
Group Condition EFB2_03624 EFB2_03625 EFB2_03626 EFB2_03627 EFB2_03628
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.1 -0.1 -0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 +0.1 +0.0 -0.1 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.2 +0.0 +0.1 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.1 -0.1 +0.1 -0.3
no phage control BHIS no phage control -0.0 +0.1 -0.0 -0.1 -0.3
mixed community no phage control BHIS no phage control with 14 member community +0.0 +0.2 -0.0 +0.1 -0.5
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.1 +0.0 -0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.1 -0.0 -0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.0 -0.0 -0.1 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.0 +0.0 +0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 +0.1 -0.2 +0.0
no phage control BHIS_CaCl2 no phage control -0.3 +0.2 -0.1 +0.2 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 -0.1 -0.0 +0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.0 +0.0 +0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 +0.1 -0.1 +0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.1 +0.1 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.1 +0.0 -0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 -0.0 -0.1 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.2 +0.2 +0.1 -0.0 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.1 -0.0 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 +0.0 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 +0.0 -0.1 +0.3
no phage control BHIS no phage control -0.0 +0.1 +0.0 +0.2 +0.1
no phage control BHIS no phage control -0.0 -0.0 +0.1 +0.1 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.1 -0.0 +0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.1 +0.1 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.1 +0.2 +0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 -0.1 +0.0 +0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.0 -0.0 +0.3 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.0 -0.0 +0.5 +0.4
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