Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03619 and EFB2_03620 are separated by 125 nucleotidesEFB2_03620 and EFB2_03621 are separated by 245 nucleotidesEFB2_03621 and EFB2_03622 are separated by 343 nucleotidesEFB2_03622 and EFB2_03623 are separated by 307 nucleotides EFB2_03619: EFB2_03619 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 3,784,748 to 3,786,022 _03619 EFB2_03620: EFB2_03620 - ATP-dependent Clp protease proteolytic subunit, at 3,786,148 to 3,786,771 _03620 EFB2_03621: EFB2_03621 - Trigger factor, at 3,787,017 to 3,788,315 _03621 EFB2_03622: EFB2_03622 - DNA-binding transcriptional regulator BolA, at 3,788,659 to 3,788,973 _03622 EFB2_03623: EFB2_03623 - hypothetical protein, at 3,789,281 to 3,789,859 _03623
Group Condition EFB2_03619 EFB2_03620 EFB2_03621 EFB2_03622 EFB2_03623
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -1.5 -1.7 -0.2 -0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.0 -1.6 -0.1 -0.1 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -1.1 -1.6 -0.1 -0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.9 -1.7 -0.1 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.0 -1.5 -0.3 +0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.2 -1.2 -0.1 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -1.4 -1.0 -0.2 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.1 -1.1 -0.2 -0.0 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -1.4 -1.1 -0.2 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -1.1 -1.4 -0.0 -0.0 +0.1
no phage control BHIS no phage control -0.8 -1.6 -0.1 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -1.2 -0.9 -0.1 +0.0 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -1.1 -1.1 -0.2 +0.2 -0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -1.1 -1.1 -0.1 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.3 -1.0 -0.2 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.7 -1.5 -0.0 -0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.9 -1.2 -0.1 +0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -1.2 -1.2 +0.2 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.7 -1.2 -0.3 +0.1 -0.2
mixed community no phage control BHIS no phage control with 14 member community -0.8 -1.0 -0.5 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -1.7 -0.7 +0.1 +0.1 -0.1
no phage control BHIS no phage control -0.7 -1.3 -0.4 -0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.1 -0.9 -0.3 +0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.5 -1.5 -0.1 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.3 -0.9 +0.0 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -1.3 -0.5 -0.3 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 -1.9 +0.0 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 -1.5 -0.2 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.8 -1.1 -0.1 +0.1 -0.1
no phage control BHIS_CaCl2 no phage control +1.2 +1.3 -2.6 +0.2 -0.1
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