Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03589 and EFB2_03590 are separated by 152 nucleotidesEFB2_03590 and EFB2_03591 are separated by 69 nucleotidesEFB2_03591 and EFB2_03592 are separated by 13 nucleotidesEFB2_03592 and EFB2_03593 are separated by 211 nucleotides EFB2_03589: EFB2_03589 - Adenine phosphoribosyltransferase, at 3,751,473 to 3,752,024 _03589 EFB2_03590: EFB2_03590 - Inner membrane protein YbaN, at 3,752,177 to 3,752,554 _03590 EFB2_03591: EFB2_03591 - Primosomal replication protein N'', at 3,752,624 to 3,753,151 _03591 EFB2_03592: EFB2_03592 - hypothetical protein, at 3,753,165 to 3,753,326 _03592 EFB2_03593: EFB2_03593 - Mechanosensitive channel MscK, at 3,753,538 to 3,756,900 _03593
Group Condition EFB2_03589 EFB2_03590 EFB2_03591 EFB2_03592 EFB2_03593
no phage control BHIS_CaCl2 no phage control -3.0 +0.1 -0.2 -0.5 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -2.9 +0.1 -0.1 -0.8 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -2.5 +0.0 -0.4 -0.7 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -3.2 +0.0 -0.4 +0.2 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -2.7 +0.1 -0.2 -0.4 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -2.4 +0.1 -0.5 -0.4 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -2.0 +0.0 -0.6 -0.6 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -1.9 -0.0 -0.1 -1.2 +0.1
no phage control BHIS_CaCl2 no phage control -2.1 +0.5 -0.9 -0.9 +0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -2.3 -0.0 -0.2 -0.5 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -1.9 +0.3 -0.4 -0.8 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -2.5 +0.1 +0.0 -0.5 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -2.2 +0.3 -0.6 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -2.5 +0.2 -0.3 +0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -1.7 +0.1 -0.4 -0.5 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -1.8 +0.2 -0.3 -0.7 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -1.9 +0.1 -0.5 +0.0 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.8 -0.0 -0.4 -0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -1.7 +0.1 -0.2 -0.5 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -2.0 -0.1 -0.2 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -2.1 +0.2 -0.1 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -1.8 +0.3 -0.1 -0.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -2.2 +0.4 -0.4 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -2.0 +0.2 -0.3 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -1.8 +0.2 -0.1 -0.4 +0.1
mixed community no phage control BHIS no phage control with 14 member community -2.0 -0.1 +0.1 +0.3 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.2 +0.5 -0.3 -0.4 +0.1
no phage control BHIS no phage control -1.8 -0.1 +0.0 +0.5 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -1.7 +0.1 -0.5 +0.8 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.9 +0.0 +0.1 +0.8 -0.0
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