Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03577 and EFB2_03578 are separated by 36 nucleotidesEFB2_03578 and EFB2_03579 are separated by 217 nucleotidesEFB2_03579 and EFB2_03580 are separated by 238 nucleotidesEFB2_03580 and EFB2_03581 are separated by 129 nucleotides EFB2_03577: EFB2_03577 - Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK, at 3,736,473 to 3,736,952 _03577 EFB2_03578: EFB2_03578 - Protein UshA, at 3,736,989 to 3,738,641 _03578 EFB2_03579: EFB2_03579 - Fosmidomycin resistance protein, at 3,738,859 to 3,740,079 _03579 EFB2_03580: EFB2_03580 - Putative cation/proton antiporter YbaL, at 3,740,318 to 3,741,994 _03580 EFB2_03581: EFB2_03581 - Inosine-guanosine kinase, at 3,742,124 to 3,743,428 _03581
Group Condition EFB2_03577 EFB2_03578 EFB2_03579 EFB2_03580 EFB2_03581
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 -0.0 -0.1 -0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.2 -0.1 +0.0 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 -0.1 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 +0.1 -0.2 +0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.1 -0.1 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.0 +0.0 -0.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.0 -0.2 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.2 -0.1 +0.0 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 -0.0 -0.1 -0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 -0.1 -0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.0 +0.1 -0.0 -0.2 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.3 +0.1 +0.1 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.1 -0.1 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.1 -0.1 -0.1 +0.0
no phage control BHIS no phage control -0.2 -0.0 -0.0 +0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.0 -0.1 +0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.1 -0.1 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.0 +0.1 -0.1 -0.0
no phage control BHIS_CaCl2 no phage control +0.2 +0.4 -0.1 -0.5 +0.2
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 +0.1 +0.1 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.4 +0.1 -0.2 -0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 -0.0 +0.1 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.0 -0.0 -0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.2 -0.0 -0.0 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 -0.0 -0.0 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 +0.1 -0.0 +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.2 +0.1 +0.1 -0.0 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 +0.1 +0.1 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 +0.2 +0.2 +0.0
mixed community no phage control BHIS no phage control with 14 member community +0.2 -0.1 +0.1 +0.1 +0.2
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EFB2_03581
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