Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03537 and EFB2_03538 are separated by 110 nucleotidesEFB2_03538 and EFB2_03539 are separated by 95 nucleotidesEFB2_03539 and EFB2_03540 overlap by 4 nucleotidesEFB2_03540 and EFB2_03541 are separated by 232 nucleotides EFB2_03537: EFB2_03537 - UDP-2,3-diacylglucosamine hydrolase, at 3,693,984 to 3,694,706 _03537 EFB2_03538: EFB2_03538 - hypothetical protein, at 3,694,817 to 3,695,146 _03538 EFB2_03539: EFB2_03539 - N5-carboxyaminoimidazole ribonucleotide mutase, at 3,695,242 to 3,695,751 _03539 EFB2_03540: EFB2_03540 - N5-carboxyaminoimidazole ribonucleotide synthase, at 3,695,748 to 3,696,815 _03540 EFB2_03541: EFB2_03541 - Carbamate kinase 1, at 3,697,048 to 3,697,941 _03541
Group Condition EFB2_03537 EFB2_03538 EFB2_03539 EFB2_03540 EFB2_03541
no phage control BHIS no phage control N.D. +0.1 -1.0 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. -0.1 -0.2 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.0 -0.3 -0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community N.D. -0.1 -0.2 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.2 -0.3 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae N.D. +0.0 -0.4 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.1 -0.2 +0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.1 -0.3 +0.0 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. +0.0 -0.4 +0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.0 -0.2 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.1 -0.1 -0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.1 -0.3 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.1 +0.1 -0.2 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.2 -0.1 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.1 +0.2 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community N.D. +0.3 -0.2 +0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) N.D. +0.2 +0.1 +0.0 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.1 +0.3 -0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.1 +0.2 -0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. -0.1 +0.4 +0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. -0.2 +0.3 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae N.D. -0.1 +0.2 -0.1 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.1 +0.2 -0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. -0.1 +0.2 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) N.D. +0.1 +0.2 -0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) N.D. +0.0 +0.4 +0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) N.D. -0.1 +0.4 +0.0 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community N.D. +0.1 +0.3 +0.1 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI N.D. +0.2 +0.3 +0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae N.D. +0.2 +0.3 +0.1 +0.2
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