Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03504 and EFB2_03505 overlap by 4 nucleotidesEFB2_03505 and EFB2_03506 are separated by 215 nucleotidesEFB2_03506 and EFB2_03507 overlap by 4 nucleotidesEFB2_03507 and EFB2_03508 are separated by 2 nucleotides EFB2_03504: EFB2_03504 - Ferric enterobactin transport ATP-binding protein FepC, at 3,654,572 to 3,655,387 _03504 EFB2_03505: EFB2_03505 - Ferric enterobactin transport protein FepE, at 3,655,384 to 3,656,517 _03505 EFB2_03506: EFB2_03506 - Enterobactin synthase component F, at 3,656,733 to 3,660,614 _03506 EFB2_03507: EFB2_03507 - Enterobactin biosynthesis protein YbdZ, at 3,660,611 to 3,660,829 _03507 EFB2_03508: EFB2_03508 - Enterochelin esterase, at 3,660,832 to 3,662,034 _03508
Group Condition EFB2_03504 EFB2_03505 EFB2_03506 EFB2_03507 EFB2_03508
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -3.1 +0.0 +0.0 -1.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -3.0 -0.0 +0.0 -0.4 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -3.2 +0.0 -0.0 -0.3 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -3.1 -0.1 +0.0 -0.3 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -3.2 +0.0 +0.0 +0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community -2.4 +0.0 +0.0 -0.7 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -2.1 -0.2 -0.1 -0.5 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -2.0 -0.1 +0.0 -0.8 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -2.0 +0.2 +0.1 -1.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -3.0 +0.2 +0.1 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -2.0 -0.1 -0.1 -0.5 +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -1.4 +0.1 +0.0 -1.3 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -1.6 +0.0 +0.1 -1.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -2.0 -0.1 +0.0 -0.3 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -3.1 +0.1 +0.1 +0.6 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -2.1 +0.0 -0.1 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -2.1 +0.1 -0.0 -0.3 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 +0.0 +0.1 -1.9 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -1.6 -0.2 +0.1 -0.3 +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -1.6 +0.2 +0.0 -0.5 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -2.1 +0.1 +0.0 +0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -2.0 +0.1 -0.0 +0.7 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -2.0 +0.2 +0.0 +0.5 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -2.0 +0.2 +0.0 +0.6 -0.0
no phage control BHIS_CaCl2 no phage control -2.2 -0.0 +0.0 +0.8 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.8 +0.1 -0.0 +0.5 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -1.9 +0.3 +0.0 +0.8 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -1.7 +0.1 +0.1 +1.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.4 +0.1 +0.1 +1.3 +0.0
no phage control BHIS_CaCl2 no phage control +0.1 +0.4 -0.0 +2.2 -0.1
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