Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03500 and EFB2_03501 are separated by 3 nucleotidesEFB2_03501 and EFB2_03502 are separated by 110 nucleotidesEFB2_03502 and EFB2_03503 overlap by 4 nucleotidesEFB2_03503 and EFB2_03504 overlap by 4 nucleotides EFB2_03500: EFB2_03500 - Ferrienterobactin-binding periplasmic protein, at 3,650,261 to 3,651,217 _03500 EFB2_03501: EFB2_03501 - Enterobactin exporter EntS, at 3,651,221 to 3,652,471 _03501 EFB2_03502: EFB2_03502 - Ferric enterobactin transport system permease protein FepD, at 3,652,582 to 3,653,586 _03502 EFB2_03503: EFB2_03503 - Ferric enterobactin transport system permease protein FepG, at 3,653,583 to 3,654,575 _03503 EFB2_03504: EFB2_03504 - Ferric enterobactin transport ATP-binding protein FepC, at 3,654,572 to 3,655,387 _03504
Group Condition EFB2_03500 EFB2_03501 EFB2_03502 EFB2_03503 EFB2_03504
mixed community no phage control BHIS no phage control with 14 member community -2.7 -0.0 N.D. -3.2 -2.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.8 +0.0 N.D. -3.2 -3.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.7 -0.0 N.D. -3.1 -3.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -2.5 -0.1 N.D. -1.9 -3.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -2.2 +0.1 N.D. -3.5 -1.9
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.9 -0.0 N.D. -3.4 -2.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.3 +0.1 N.D. -3.7 -2.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.8 +0.1 N.D. -3.3 -1.8
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.4 -0.0 N.D. -3.2 -3.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.3 -0.1 N.D. -3.4 -1.9
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -2.4 +0.0 N.D. -1.9 -2.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -2.0 +0.1 N.D. -2.6 -1.5
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -1.0 +0.0 N.D. -1.3 -3.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -2.0 +0.1 N.D. -0.3 -3.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.1 N.D. -3.6 -1.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -1.8 +0.1 N.D. -1.4 -2.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.2 +0.0 N.D. -3.3 -1.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -1.4 -0.0 N.D. -2.7 -0.9
no phage control BHIS_CaCl2 no phage control -0.5 +0.0 N.D. -2.4 -2.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -2.0 +0.1 N.D. -1.0 -2.0
no phage control BHIS no phage control +0.1 +0.1 N.D. -3.4 -1.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.8 +0.1 N.D. -3.3 -0.7
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.6 +0.0 N.D. -3.6 -0.3
mixed community no phage control BHIS no phage control with 14 member community -1.8 +0.2 N.D. -2.2 -0.7
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -1.0 +0.2 N.D. -1.4 -2.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 +0.1 N.D. -3.6 -0.5
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -1.5 -0.1 N.D. +0.8 -3.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -1.9 +0.1 N.D. -2.5 +0.6
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.9 +0.0 N.D. -3.6 +1.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.1 N.D. -3.6 +0.5
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