Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03439 and EFB2_03440 overlap by 4 nucleotidesEFB2_03440 and EFB2_03441 are separated by 89 nucleotidesEFB2_03441 and EFB2_03442 are separated by 24 nucleotidesEFB2_03442 and EFB2_03443 are separated by 77 nucleotides EFB2_03439: EFB2_03439 - PhoH-like protein, at 3,590,539 to 3,591,618 _03439 EFB2_03440: EFB2_03440 - Endoribonuclease YbeY, at 3,591,615 to 3,592,082 _03440 EFB2_03441: EFB2_03441 - Magnesium and cobalt efflux protein CorC, at 3,592,172 to 3,593,050 _03441 EFB2_03442: EFB2_03442 - Apolipoprotein N-acyltransferase, at 3,593,075 to 3,594,613 _03442 EFB2_03443: EFB2_03443 - Rhomboid protease GlpG, at 3,594,691 to 3,596,568 _03443
Group Condition EFB2_03439 EFB2_03440 EFB2_03441 EFB2_03442 EFB2_03443
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 N.D. -1.3 N.D. +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 N.D. -1.0 N.D. -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 N.D. -1.0 N.D. -0.1
no phage control BHIS_CaCl2 no phage control -0.3 N.D. -0.9 N.D. +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 N.D. -0.9 N.D. +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 N.D. -0.8 N.D. +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 N.D. -0.5 N.D. -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 N.D. -0.6 N.D. +0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.3 N.D. -0.2 N.D. +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.0 N.D. -0.4 N.D. +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 N.D. -0.4 N.D. -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 N.D. -0.2 N.D. +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 N.D. -0.3 N.D. +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 N.D. -0.3 N.D. +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.0 N.D. -0.3 N.D. +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.0 N.D. -0.3 N.D. +0.1
no phage control BHIS_CaCl2 no phage control +0.1 N.D. -0.3 N.D. +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 N.D. -0.3 N.D. -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 N.D. +0.2 N.D. +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.2 N.D. -0.2 N.D. +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 N.D. +0.3 N.D. +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 N.D. +0.3 N.D. +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 N.D. +0.4 N.D. +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 N.D. +0.3 N.D. -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 N.D. +0.2 N.D. +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 N.D. +0.3 N.D. +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 N.D. +0.5 N.D. +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.3 N.D. +0.3 N.D. +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 N.D. +0.5 N.D. +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 N.D. +0.8 N.D. +0.0
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