Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03407 and EFB2_03408 are separated by 184 nucleotidesEFB2_03408 and EFB2_03409 are separated by 70 nucleotidesEFB2_03409 and EFB2_03410 are separated by 138 nucleotidesEFB2_03410 and EFB2_03411 are separated by 288 nucleotides EFB2_03407: EFB2_03407 - Negative modulator of initiation of replication, at 3,561,869 to 3,562,414 _03407 EFB2_03408: EFB2_03408 - Esterase YbfF, at 3,562,599 to 3,563,363 _03408 EFB2_03409: EFB2_03409 - putative protein YbfE, at 3,563,434 to 3,563,796 _03409 EFB2_03410: EFB2_03410 - Flavodoxin 1, at 3,563,935 to 3,564,465 _03410 EFB2_03411: EFB2_03411 - Ferric uptake regulation protein, at 3,564,754 to 3,565,200 _03411
Group Condition EFB2_03407 EFB2_03408 EFB2_03409 EFB2_03410 EFB2_03411
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -2.7 +0.0 -0.4 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -2.5 -0.0 -0.5 N.D. N.D.
no phage control BHIS no phage control -2.6 -0.1 -0.2 N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -2.3 -0.0 -0.5 N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -2.6 +0.1 -0.3 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -2.3 +0.0 -0.5 N.D. N.D.
no phage control BHIS no phage control -2.3 -0.0 -0.3 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -2.1 -0.3 -0.1 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -2.1 -0.1 -0.3 N.D. N.D.
no phage control BHIS_CaCl2 no phage control -2.2 +0.1 -0.4 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -2.3 +0.2 -0.4 N.D. N.D.
mixed community no phage control BHIS no phage control with 14 member community -1.8 -0.3 -0.3 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -2.1 -0.1 -0.3 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -2.1 -0.0 -0.3 N.D. N.D.
mixed community no phage control BHIS no phage control with 14 member community -2.0 +0.1 -0.4 N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -2.1 +0.1 -0.3 N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -2.1 +0.1 -0.3 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.8 -0.2 -0.3 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.6 -0.2 -0.4 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -1.9 +0.1 -0.3 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -1.7 -0.1 -0.3 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -2.1 +0.1 -0.0 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -2.1 +0.3 -0.2 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -1.6 +0.0 -0.4 N.D. N.D.
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -1.7 +0.1 -0.3 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -1.6 +0.1 -0.4 N.D. N.D.
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -1.8 +0.1 -0.1 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.7 +0.2 -0.3 N.D. N.D.
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -1.7 +0.3 -0.2 N.D. N.D.
no phage control BHIS_CaCl2 no phage control +2.6 -0.1 -1.6 N.D. N.D.
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