Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03389 and EFB2_03390 are separated by 35 nucleotidesEFB2_03390 and EFB2_03391 overlap by 11 nucleotidesEFB2_03391 and EFB2_03392 overlap by 7 nucleotidesEFB2_03392 and EFB2_03393 are separated by 22 nucleotides EFB2_03389: EFB2_03389 - Endonuclease 8, at 3,539,941 to 3,540,732 _03389 EFB2_03390: EFB2_03390 - 5-oxoprolinase subunit A, at 3,540,768 to 3,541,502 _03390 EFB2_03391: EFB2_03391 - 5-oxoprolinase subunit C, at 3,541,492 to 3,542,424 _03391 EFB2_03392: EFB2_03392 - 5-oxoprolinase subunit B, at 3,542,418 to 3,543,074 _03392 EFB2_03393: EFB2_03393 - GTP cyclohydrolase 1 type 2, at 3,543,097 to 3,543,840 _03393
Group Condition EFB2_03389 EFB2_03390 EFB2_03391 EFB2_03392 EFB2_03393
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.0 -0.1 -0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.2 -0.0 -0.3 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.0 +0.1 -0.3 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 +0.1 -0.3 +0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 +0.1 -0.4 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.0 +0.2 -0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.2 +0.1 -0.0 -0.2 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.2 +0.1 -0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 -0.2 +0.1 -0.1
no phage control BHIS no phage control +0.1 +0.2 -0.0 -0.2 -0.0
no phage control BHIS_CaCl2 no phage control -0.4 +0.1 -0.1 +0.3 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 +0.1 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.3 +0.1 -0.3 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 +0.1 +0.2 -0.2 +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.0 +0.1 -0.1 -0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 +0.2 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 -0.1 -0.0 +0.2 +0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.3 +0.1 -0.0 +0.1 -0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.0 +0.3 -0.3 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.2 -0.0 -0.2 +0.2
mixed community no phage control BHIS no phage control with 14 member community +0.1 +0.1 -0.1 +0.0 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.2 +0.0 +0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.2 -0.1 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.2 +0.1 -0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 +0.1 -0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.2 +0.1 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.2 +0.1 +0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.2 +0.1 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.1 +0.2 +0.2 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.1 +0.2 +0.0 +0.2
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