Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03348 and EFB2_03349 are separated by 3 nucleotidesEFB2_03349 and EFB2_03350 overlap by 7 nucleotidesEFB2_03350 and EFB2_03351 are separated by 202 nucleotidesEFB2_03351 and EFB2_03352 are separated by 165 nucleotides EFB2_03348: EFB2_03348 - Galactose-1-phosphate uridylyltransferase, at 3,504,576 to 3,505,622 _03348 EFB2_03349: EFB2_03349 - Galactokinase, at 3,505,626 to 3,506,774 _03349 EFB2_03350: EFB2_03350 - Aldose 1-epimerase, at 3,506,768 to 3,507,808 _03350 EFB2_03351: EFB2_03351 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 3,508,011 to 3,508,763 _03351 EFB2_03352: EFB2_03352 - Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive, at 3,508,929 to 3,509,981 _03352
Group Condition EFB2_03348 EFB2_03349 EFB2_03350 EFB2_03351 EFB2_03352
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 +0.1 -0.5 -0.4 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.3 +0.0 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.3 -0.1 -0.0 -0.3 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 -0.1 +0.0 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 +0.0 -0.1 -0.2 -0.1
no phage control BHIS no phage control +0.1 +0.1 +0.1 -0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 -0.1 +0.0 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 +0.2 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.1 -0.1 +0.2 -0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.1 -0.2 +0.1 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.2 +0.0 +0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.2 -0.1 -0.2 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.2 +0.0 -0.1 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.2 -0.1 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.3 -0.1 +0.1 -0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.2 -0.1 -0.1 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 +0.1 -0.0 -0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 -0.2 +0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.3 +0.2 +0.0 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 +0.2 +0.1 -0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 -0.1 -0.0 +0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.2 +0.1 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.4 -0.0 -0.0 +0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 +0.0 +0.4 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.1 +0.2 +0.0 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.2 +0.1 +0.3 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.2 +0.2 +0.2 +0.0 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 +0.2 -0.0 -0.1 +0.3
mixed community no phage control BHIS no phage control with 14 member community +0.1 +0.3 +0.0 +0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 +0.2 +0.3 +0.2 +0.0
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