Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03342 and EFB2_03343 overlap by 1 nucleotidesEFB2_03343 and EFB2_03344 are separated by 166 nucleotidesEFB2_03344 and EFB2_03345 are separated by 128 nucleotidesEFB2_03345 and EFB2_03346 are separated by 67 nucleotides EFB2_03342: EFB2_03342 - Molybdenum transport system permease protein ModB, at 3,499,053 to 3,499,742 _03342 EFB2_03343: EFB2_03343 - Molybdate-binding protein ModA, at 3,499,742 to 3,500,515 _03343 EFB2_03344: EFB2_03344 - Multidrug efflux pump accessory protein AcrZ, at 3,500,682 to 3,500,831 _03344 EFB2_03345: EFB2_03345 - DNA-binding transcriptional dual regulator ModE, at 3,500,960 to 3,501,748 _03345 EFB2_03346: EFB2_03346 - ABC transporter ATP-binding protein ModF, at 3,501,816 to 3,503,288 _03346
Group Condition EFB2_03342 EFB2_03343 EFB2_03344 EFB2_03345 EFB2_03346
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.4 -1.4 -0.0 -0.1
no phage control BHIS_CaCl2 no phage control -0.1 -0.1 -0.9 -0.0 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.0 -0.5 -0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.1 -0.4 -0.1 -0.0
no phage control BHIS no phage control +0.1 -0.1 -0.2 -0.3 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 -0.1 -0.2 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 +0.2 -0.4 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.1 -0.5 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.2 -0.3 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.3 -0.1 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.1 -0.3 -0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 -0.0 -0.2 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.2 -0.2 -0.2 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.1 -0.1 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.0 -0.3 -0.1 +0.0
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI -0.1 +0.3 -0.2 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.1 +0.2 -0.0 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.2 -0.2 -0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.2 -0.2 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.2 -0.1 -0.1 +0.2
mixed community no phage control BHIS no phage control with 14 member community +0.1 -0.2 +0.1 -0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.1 +0.1 -0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 +0.1 -0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.1 +0.3 -0.1 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.0 +0.3 +0.2 -0.1 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.1 +0.5 -0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.1 +0.2 +0.3 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.1 +0.2 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.3 +0.1 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.2 +0.3 -0.1 +0.0
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