Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03318 and EFB2_03319 are separated by 205 nucleotidesEFB2_03319 and EFB2_03320 are separated by 136 nucleotidesEFB2_03320 and EFB2_03321 are separated by 1 nucleotidesEFB2_03321 and EFB2_03322 overlap by 8 nucleotides EFB2_03318: EFB2_03318 - hypothetical protein, at 3,473,054 to 3,473,767 _03318 EFB2_03319: EFB2_03319 - Inner membrane protein YbhL, at 3,473,973 to 3,474,677 _03319 EFB2_03320: EFB2_03320 - Molybdopterin synthase catalytic subunit, at 3,474,814 to 3,475,266 _03320 EFB2_03321: EFB2_03321 - Molybdopterin synthase sulfur carrier subunit, at 3,475,268 to 3,475,513 _03321 EFB2_03322: EFB2_03322 - Cyclic pyranopterin monophosphate synthase, at 3,475,506 to 3,475,991 _03322
Group Condition EFB2_03318 EFB2_03319 EFB2_03320 EFB2_03321 EFB2_03322
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 +0.2 -1.8 N.D. -0.4
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.0 -0.5 N.D. -0.9
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.0 -1.3 N.D. -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.4 +0.0 -0.8 N.D. -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.1 -1.1 N.D. -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 +0.0 -0.9 N.D. -0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 -0.5 N.D. -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.2 -1.4 N.D. +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.1 -0.4 N.D. -0.5
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.0 -1.0 N.D. -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.2 +0.1 -0.1 N.D. -0.7
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 +0.1 -0.9 N.D. -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.0 -0.7 N.D. -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.2 +0.1 -0.8 N.D. +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.3 -0.1 -0.7 N.D. -0.3
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.2 -0.1 -0.5 N.D. -0.3
no phage control BHIS_CaCl2 no phage control +0.1 +0.1 -0.9 N.D. +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.3 +0.0 -0.8 N.D. -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 +0.2 -0.4 N.D. -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 +0.1 -0.8 N.D. +0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.3 +0.1 -0.6 N.D. -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 +0.3 -0.7 N.D. +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.2 -0.3 N.D. +0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 +0.1 -0.6 N.D. -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.0 +0.3 -0.6 N.D. +0.0
mixed community no phage control BHIS no phage control with 14 member community +0.4 -0.0 -0.5 N.D. -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.4 -0.1 +0.1 N.D. -0.4
no phage control BHIS_CaCl2 no phage control +0.3 +0.1 +0.1 N.D. -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.1 +0.3 N.D. -0.4
mixed community no phage control BHIS no phage control with 14 member community +0.5 +0.1 -0.3 N.D. -0.1
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EFB2_03318
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EFB2_03319
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EFB2_03322
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