Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03307 and EFB2_03308 are separated by 232 nucleotidesEFB2_03308 and EFB2_03309 are separated by 228 nucleotidesEFB2_03309 and EFB2_03310 are separated by 2 nucleotidesEFB2_03310 and EFB2_03311 overlap by 8 nucleotides EFB2_03307: EFB2_03307 - N-glycosidase YbiA, at 3,461,897 to 3,462,094 _03307 EFB2_03308: EFB2_03308 - ATP-dependent RNA helicase RhlE, at 3,462,327 to 3,463,688 _03308 EFB2_03309: EFB2_03309 - HTH-type transcriptional dual regulator CecR, at 3,463,917 to 3,464,588 _03309 EFB2_03310: EFB2_03310 - hypothetical protein, at 3,464,591 to 3,465,586 _03310 EFB2_03311: EFB2_03311 - putative multidrug ABC transporter ATP-binding protein YbhF, at 3,465,579 to 3,467,315 _03311
Group Condition EFB2_03307 EFB2_03308 EFB2_03309 EFB2_03310 EFB2_03311
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -1.1 -0.1 -0.1 +0.0 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.8 -0.2 -0.1 -0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.8 -0.2 +0.1 -0.2 +0.1
no phage control BHIS_CaCl2 no phage control -0.2 -0.5 +0.1 -0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae -0.4 -0.1 +0.1 -0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.2 -0.0 +0.0 -0.3 -0.2
no phage control BHIS_CaCl2 no phage control -0.4 -0.1 -0.1 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.5 +0.0 +0.1 -0.2 -0.2
no phage control BHIS_CaCl2 no phage control -0.2 -0.1 +0.1 -0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.4 -0.2 +0.0 +0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.5 -0.1 +0.2 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 -0.2 -0.1 -0.4 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 -0.2 +0.1 -0.2 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.3 -0.1 -0.1 +0.0 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.1 +0.0 -0.1 -0.2
mixed community no phage control BHIS no phage control with 14 member community -0.2 -0.2 +0.0 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 -0.0 +0.2 -0.3 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.0 +0.3 -0.5 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 -0.2 -0.0 -0.2 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 -0.2 +0.0 -0.2 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.2 +0.2 -0.1 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.3 -0.2 +0.1 -0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 -0.1 +0.0 +0.1 -0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.3 -0.2 +0.1 +0.0 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.4 -0.0 +0.1 -0.1 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.1 +0.4 +0.1 -0.0
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.4 -0.2 -0.0 +0.3 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.0 +0.1 +0.3 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.4 -0.2 +0.3 +0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community +0.4 -0.1 +0.0 +0.3 +0.0
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EFB2_03307
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EFB2_03308
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EFB2_03310
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EFB2_03311
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