Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03275 and EFB2_03276 are separated by 17 nucleotidesEFB2_03276 and EFB2_03277 are separated by 19 nucleotidesEFB2_03277 and EFB2_03278 overlap by 14 nucleotidesEFB2_03278 and EFB2_03279 are separated by 203 nucleotides EFB2_03275: EFB2_03275 - Glutathione transport system permease protein GsiC, at 3,424,402 to 3,425,322 _03275 EFB2_03276: EFB2_03276 - Glutathione-binding protein GsiB, at 3,425,340 to 3,426,878 _03276 EFB2_03277: EFB2_03277 - Glutathione import ATP-binding protein GsiA, at 3,426,898 to 3,428,769 _03277 EFB2_03278: EFB2_03278 - Isoaspartyl peptidase, at 3,428,756 to 3,429,721 _03278 EFB2_03279: EFB2_03279 - Molybdopterin molybdenumtransferase, at 3,429,925 to 3,431,160 _03279
Group Condition EFB2_03275 EFB2_03276 EFB2_03277 EFB2_03278 EFB2_03279
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 +0.0 -0.0 -0.2 -0.6
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.0 -0.0 -0.1 -0.0 -0.6
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 -0.3 -0.2 -0.1
mixed community no phage control BHIS no phage control with 14 member community -0.1 -0.2 -0.0 -0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.1 -0.1 +0.0 -0.2 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.0 -0.3 -0.1 +0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.0 -0.1 +0.0 +0.1 -0.5
no phage control BHIS no phage control -0.1 +0.0 -0.1 -0.1 -0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.0 +0.0 -0.2 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 -0.1 -0.0 -0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community +0.1 -0.2 -0.1 +0.1 -0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.0 -0.1 +0.2 -0.1 -0.4
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.1 +0.0 +0.0 -0.1 -0.4
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.0 -0.1 +0.1 -0.1 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 +0.1 -0.1 -0.2
no phage control BHIS_CaCl2 no phage control -0.0 -0.1 -0.0 +0.1 -0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 +0.2 +0.0 -0.3
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.1 -0.2 +0.1 +0.0 -0.3
no phage control BHIS_CaCl2 no phage control -0.1 +0.3 +0.0 +0.0 -0.5
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.0 -0.2 +0.1 +0.1 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 +0.1 -0.2 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.0 +0.0 -0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 -0.1 -0.0 +0.2 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 -0.0 +0.2 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 -0.0 +0.1 -0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.1 -0.0 +0.3 -0.3
mixed community no phage control BHIS no phage control with 14 member community +0.1 -0.1 -0.1 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.0 -0.1 +0.1 +0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 -0.0 +0.1 +0.2 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 -0.1 +0.1 +0.1 +0.1
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