Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03228 and EFB2_03229 overlap by 14 nucleotidesEFB2_03229 and EFB2_03230 overlap by 4 nucleotidesEFB2_03230 and EFB2_03231 are separated by 68 nucleotidesEFB2_03231 and EFB2_03232 overlap by 8 nucleotides EFB2_03228: EFB2_03228 - hypothetical protein, at 3,384,876 to 3,385,784 _03228 EFB2_03229: EFB2_03229 - hypothetical protein, at 3,385,771 to 3,386,130 _03229 EFB2_03230: EFB2_03230 - hypothetical protein, at 3,386,127 to 3,386,705 _03230 EFB2_03231: EFB2_03231 - hypothetical protein, at 3,386,774 to 3,387,220 _03231 EFB2_03232: EFB2_03232 - hypothetical protein, at 3,387,213 to 3,387,644 _03232
Group Condition EFB2_03228 EFB2_03229 EFB2_03230 EFB2_03231 EFB2_03232
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.2 -0.4 -0.3 -0.3 -0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 -0.5 -0.1 -0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.3 -0.3 -0.0 +0.0 -0.3
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 -0.4 -0.2 -0.1 +0.0
mixed community no phage control BHIS no phage control with 14 member community -0.1 -0.4 -0.1 -0.2 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae -0.3 +0.2 -0.2 -0.5 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.0 -0.6 +0.1 +0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.1 +0.1 -0.5 -0.1 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.2 +0.1 -0.2 -0.3 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 -0.1 +0.1 -0.3 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.3 +0.3 -0.3 -0.3 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 -0.5 +0.1 -0.1 +0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.3 -0.3 +0.1 +0.2 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.0 -0.4 -0.1 -0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 +0.3 -0.0 -0.3 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.4 +0.2 +0.1 -0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.3 -0.3 -0.3 -0.0 +0.0
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.2 +0.2 +0.1 -0.3 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.5 +0.2 -0.4 +0.4
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.4 +0.5 -0.4 +0.2 -0.0
mixed community no phage control BHIS no phage control with 14 member community +0.2 -0.6 -0.3 +0.5 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 -0.6 +0.2 +0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.3 +0.1 -0.3 -0.2 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.4 -0.5 +0.0 -0.1
mixed community no phage control BHIS no phage control with 14 member community +0.3 -0.2 +0.2 -0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) -0.3 +0.3 +0.2 +0.2 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 +0.3 -0.3 +0.4 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.4 +0.3 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.2 +0.5 +0.5 -0.2 +0.2
no phage control BHIS_CaCl2 no phage control +0.4 +0.3 +0.4 -0.2 +0.6
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EFB2_03228
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EFB2_03229
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EFB2_03231
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EFB2_03232
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