Fitness for 5 genes in Escherichia fergusonii Becca

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500 ntEFB2_03197 and EFB2_03198 are separated by 17 nucleotidesEFB2_03198 and EFB2_03199 are separated by 6 nucleotidesEFB2_03199 and EFB2_03200 overlap by 1 nucleotidesEFB2_03200 and EFB2_03201 are separated by 225 nucleotides EFB2_03197: EFB2_03197 - Arginine transport ATP-binding protein ArtP, at 3,357,806 to 3,358,534 _03197 EFB2_03198: EFB2_03198 - Putative ABC transporter arginine-binding protein 2, at 3,358,552 to 3,359,283 _03198 EFB2_03199: EFB2_03199 - Arginine ABC transporter permease protein ArtQ, at 3,359,290 to 3,360,006 _03199 EFB2_03200: EFB2_03200 - Arginine ABC transporter permease protein ArtM, at 3,360,006 to 3,360,674 _03200 EFB2_03201: EFB2_03201 - ABC transporter arginine-binding protein 1, at 3,360,900 to 3,361,631 _03201
Group Condition EFB2_03197 EFB2_03198 EFB2_03199 EFB2_03200 EFB2_03201
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 -0.2 -0.2 -0.1
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae -0.2 -0.1 -0.1 -0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.0 -0.2 +0.0 -0.2
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.1 +0.1 -0.4 -0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.0 +0.1 -0.2 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.3 +0.0 -0.1 +0.1 -0.1
no phage control BHIS_CaCl2 no phage control -0.1 -0.1 -0.3 -0.2 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community plus Klebsiella pneumoniae +0.1 +0.0 -0.4 -0.2 +0.1
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) +0.1 -0.2 -0.1 +0.0 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; 14 member community -0.2 +0.1 -0.1 +0.1 -0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.1 +0.2 -0.1 -0.1 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) -0.0 +0.2 -0.1 +0.2 -0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 +0.1 -0.1 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) -0.1 -0.1 +0.1 +0.1 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 +0.1 -0.1 +0.2 -0.2
mixed community no phage control BHIS no phage control with 14 member community plus Klebsiella pneumoniae +0.2 -0.1 -0.2 +0.2 +0.0
no phage control BHIS no phage control -0.0 -0.1 -0.2 +0.2 +0.3
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.1 -0.1 -0.0 +0.1 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.2 +0.0 +0.2 +0.2
mixed community no phage control BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.2 -0.2 +0.1 -0.0
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community -0.1 +0.2 +0.1 +0.0 -0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community plus Klebsiella pneumoniae +0.0 +0.1 -0.1 +0.2 +0.1
phage monoculture BHIS_CaCl2 with hk phage cocktail 1 MOI +0.0 +0.3 -0.1 +0.1 +0.0
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1) -0.1 -0.1 +0.1 +0.2 +0.2
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) +0.2 -0.2 +0.1 +0.0 +0.2
mixed community no phage control BHIS no phage control with 14 member community -0.2 +0.1 +0.4 +0.0 +0.0
mixed community no phage control BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1) +0.0 +0.1 +0.2 -0.1 +0.1
mixed community no phage control BHIS no phage control with 14 member community -0.1 +0.1 +0.2 +0.1 +0.1
mixed community no phage control BHIS_CaCl2 no phage control with 14 member community +0.1 +0.0 +0.2 +0.2 +0.1
phage mixed community phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2) +0.1 +0.1 +0.2 +0.1 +0.1
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